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A Semi-Automated and Reproducible Biological-Based Method to Quantify Calcium Deposition In Vitro
Published on: June 2, 2022
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Automated quantitative assessment of amorphous calcifications: Towards improved malignancy risk stratification
Kalyani Marathe1, Chrysostomos Marasinou2, Beibin Li3
1Department of Electrical and Computer Engineering, University of Washington, Seattle, WA, USA.
Computers in Biology and Medicine
|May 7, 2022
Summary
A new quantitative approach using mammogram features can help differentiate benign from potentially cancerous amorphous calcifications, potentially reducing unnecessary biopsies.
Area of Science:
- Medical Imaging
- Radiology
- Machine Learning in Healthcare
Background:
- Amorphous calcifications on mammograms present diagnostic challenges, leading to frequent biopsies with low cancer yield.
- Only 20% of biopsied amorphous calcifications are ultimately found to be cancerous.
Purpose of the Study:
- To develop and validate a quantitative approach for distinguishing benign from actionable amorphous calcifications.
- To reduce diagnostic uncertainty and potentially decrease the number of unnecessary breast biopsies.
Main Methods:
- Trained and validated a LightGBM classifier on 248 mammography images with biopsy-confirmed diagnoses.
- Extracted local (radiomic, region measurements) and global (distribution, expert-defined) features.
- Utilized k-means clustering for local features and concatenated them with global features.
Main Results:
- Achieved 100% sensitivity and 35% specificity on a test set of 60 images.
- The algorithm identified 25% of cases as benign, suggesting potential biopsy reduction.
- A decision threshold of 0.4 yielded a positive predictive value of 38%.
Conclusions:
- Quantitative analysis of mammograms can identify subtle features to differentiate calcification types.
- This approach shows promise in improving the accuracy of amorphous calcification assessment.
- Further development could lead to reduced invasive procedures for benign findings.

