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Updated: Sep 23, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies
Joan Segura1, Yana Rose1, Sebastian Bittrich1
1Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, CA 92093, USA.
Motivation:
Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding of the mechanisms underpinning protein and nucleic acid function at the atomic level.
Results:
We present a new library designed to display fully customizable interactive views between 1D positional features of protein and/or nucleic acid sequences and their 3D structures as isolated chains or components of macromolecular assemblies.
Availability And Implementation:
https://github.com/rcsb/rcsb-saguaro-3d.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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