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Updated: Sep 23, 2025

Characterizing Microbiome Dynamics – Flow Cytometry Based Workflows from Pure Cultures to Natural Communities
Published on: July 12, 2018
Flow stability for dynamic community detection
Alexandre Bovet1,2, Jean-Charles Delvenne2,3, Renaud Lambiotte1
1Mathematical Institute, University of Oxford, Oxford, UK.
Abstract:
Many systems exhibit complex temporal dynamics due to the presence of different processes taking place simultaneously. An important task in these systems is to extract a simplified view of their time-dependent network of interactions. Community detection in temporal networks usually relies on aggregation over time windows or consider sequences of different stationary epochs. For dynamics-based methods, attempts to generalize static-network methodologies also face the fundamental difficulty that a stationary state of the dynamics does not always exist. Here, we derive a method based on a dynamical process evolving on the temporal network. Our method allows dynamics that do not reach a steady state and uncovers two sets of communities for a given time interval that accounts for the ordering of edges in forward and backward time. We show that our method provides a natural way to disentangle the different dynamical scales present in a system with synthetic and real-world examples.
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