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Directed Evolution of PD-L1-Targeted Affibodies by mRNA Display.

Brian J Grindel1, Brian J Engel1, Justin N Ong2

  • 1Department of Cancer Systems Imaging, MD Anderson Cancer Center, Houston, Texas 77054, United States.

ACS Chemical Biology
|May 25, 2022
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Summary

Researchers developed a novel PD-L1-binding affibody using mRNA display for potential diagnostic imaging. This small molecule shows low nanomolar affinity and tumor uptake in mice, offering a promising alternative to antibodies for PD-L1 targeting.

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Area of Science:

  • Biotechnology
  • Molecular Biology
  • Immunology

Background:

  • Therapeutic monoclonal antibodies targeting PD-L1 are effective immune checkpoint inhibitors.
  • There is a need for high-affinity, low-molecular-weight ligands for PD-L1 molecular imaging and diagnostics.
  • Affibody scaffolds offer a stable molecular base for evolving high-affinity ligands.

Purpose of the Study:

  • To select a PD-L1-binding affibody using mRNA display technology.
  • To optimize the affibody scaffold for mRNA display, incorporating high library diversity and unnatural amino acids.
  • To develop a novel imaging probe for PD-L1.

Main Methods:

  • Randomization of the binding interface of a known affibody scaffold.
  • Selection of the affibody library against recombinant human and mouse PD-L1 using mRNA display.
  • Characterization of binding affinity, cell-surface binding, and functional inhibition of PD-L1:PD-1 signaling.
  • In vivo optical imaging in a mouse lymphoma model.

Main Results:

  • Identification of a human/mouse cross-reactive PD-L1 affibody (M1) with low nanomolar affinity.
  • M1 affibody demonstrated similar binding affinity to cell-surface expressed hPD-L1 and mPD-L1.
  • The M1 affibody inhibited PD-L1:PD-1 axis signaling in a cell-based assay.
  • In vivo imaging showed significant tumor uptake of M1-Cy5 in a mouse lymphoma model.

Conclusions:

  • mRNA display is a viable platform for selecting PD-L1-binding affibodies.
  • The M1 affibody is a high-affinity, cross-reactive ligand with potential for PD-L1 diagnostic imaging.
  • This affibody represents a promising low-molecular-weight alternative to antibodies for PD-L1 targeting.