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Updated: Sep 22, 2025

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer
Almutasem Saleh1, Yasunori Noguchi1, Ricardo Aramayo1
1DNA Replication Group, Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Du Cane Road, London, W12 0NN, UK.
Abstract:
The controlled assembly of replication forks is critical for genome stability. The Dbf4-dependent Cdc7 kinase (DDK) initiates replisome assembly by phosphorylating the MCM2-7 replicative helicase at the N-terminal tails of Mcm2, Mcm4 and Mcm6. At present, it remains poorly understood how DDK docks onto the helicase and how the kinase targets distal Mcm subunits for phosphorylation. Using cryo-electron microscopy and biochemical analysis we discovered that an interaction between the HBRCT domain of Dbf4 with Mcm2 serves as an anchoring point, which supports binding of DDK across the MCM2-7 double-hexamer interface and phosphorylation of Mcm4 on the opposite hexamer. Moreover, a rotation of DDK along its anchoring point allows phosphorylation of Mcm2 and Mcm6. In summary, our work provides fundamental insights into DDK structure, control and selective activation of the MCM2-7 helicase during DNA replication. Importantly, these insights can be exploited for development of novel DDK inhibitors.
Insights
The Dbf4-dependent Cdc7 kinase (DDK) controls DNA replication fork assembly by phosphorylating the MCM2-7 helicase. This study reveals how DDK binds and targets MCM subunits, offering insights for new drug development.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Replication fork control is vital for genome stability.
- The Dbf4-dependent Cdc7 kinase (DDK) initiates DNA replication by phosphorylating the MCM2-7 helicase.
- Mechanisms of DDK docking and substrate targeting remain unclear.
Purpose of the Study:
- To elucidate the structural basis of DDK interaction with the MCM2-7 helicase.
- To understand how DDK selectively phosphorylates MCM subunits.
- To identify potential targets for DDK inhibitor development.
Main Methods:
- Cryo-electron microscopy
- Biochemical analysis
Main Results:
- Identified an interaction between Dbf4's HBRCT domain and Mcm2 as a key anchoring point.
- Demonstrated DDK binding across the MCM2-7 double-hexamer interface.
- Showed DDK phosphorylation of Mcm4, Mcm2, and Mcm6 through binding and rotation.
Conclusions:
- Provided fundamental insights into DDK structure and MCM2-7 helicase activation.
- Revealed the mechanism of DDK targeting and phosphorylation of MCM subunits.
- Established a basis for developing novel DDK inhibitors for therapeutic applications.
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