Identification of a Novel Osteogenetic Oligodeoxynucleotide (osteoDN) That Promotes Osteoblast Differentiation in a TLR9-Independent Manner
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Updated: Sep 21, 2025

A Novel in vivo Gene Transfer Technique and in vitro Cell Based Assays for the Study of Bone Loss in Musculoskeletal Disorders
Published on: June 8, 2014
Yuma Nihashi1, Mana Miyoshi2, Koji Umezawa3,4
1Department of Science and Technology, Graduate School of Medicine, Science and Technology, Shinshu University, 8304 Minami-minowa, Kami-ina, Nagano 399-4598, Japan.
Abstract:
Dysfunction of bone-forming cells, osteoblasts, is one of the causes of osteoporosis. Accumulating evidence has indicated that oligodeoxynucleotides (ODNs) designed from genome sequences have the potential to regulate osteogenic cell fate. Such osteogenetic ODNs (osteoDNs) targeting and activating osteoblasts can be the candidates of nucleic acid drugs for osteoporosis. In this study, the ODN library derived from the Lacticaseibacillus rhamnosus GG genome was screened to determine its osteogenetic effect on murine osteoblast cell line MC3T3-E1. An 18-base ODN, iSN40, was identified to enhance alkaline phosphatase activity of osteoblasts within 48 h. iSN40 also induced the expression of osteogenic genes such as Msx2, osterix, collagen type 1α, osteopontin, and osteocalcin. Eventually, iSN40 facilitated calcium deposition on osteoblasts at the late stage of differentiation. Intriguingly, the CpG motif within iSN40 was not required for its osteogenetic activity, indicating that iSN40 functions in a TLR9-independent manner. These data demonstrate that iSN40 serves as a novel osteogenetic ODN (osteoDN) that promotes osteoblast differentiation. iSN40 provides a potential seed of the nucleic acid drug that activating osteoblasts for osteoporosis therapy.
Insights
Oligodeoxynucleotides (ODNs) show promise for osteoporosis treatment. A novel ODN, iSN40, derived from Lacticaseibacillus rhamnosus GG, significantly enhances osteoblast differentiation and activity.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Osteoporosis is linked to osteoblast dysfunction.
- Oligodeoxynucleotides (ODNs) can influence osteogenic cell fate.
- Osteogenetic ODNs (osteoDNs) are potential nucleic acid therapeutics for osteoporosis.
Purpose of the Study:
- To screen an ODN library from Lacticaseibacillus rhamnosus GG for osteogenetic effects.
- To identify novel osteoDNs for osteoporosis therapy.
Main Methods:
- Screening of an ODN library against murine osteoblast cell line MC3T3-E1.
- Assessing alkaline phosphatase activity, gene expression (Msx2, osterix, collagen type 1α, osteopontin, osteocalcin), and calcium deposition.
Main Results:
- An 18-base ODN, iSN40, was identified to enhance osteoblast alkaline phosphatase activity within 48 hours.
- iSN40 promoted the expression of key osteogenic genes and facilitated calcium deposition.
- The osteogenetic activity of iSN40 was independent of the CpG motif, suggesting a TLR9-independent mechanism.
Conclusions:
- iSN40 is a novel osteoDN that promotes osteoblast differentiation.
- iSN40 represents a potential therapeutic candidate for osteoporosis by activating osteoblasts.

