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Three-dimensional Optical-resolution Photoacoustic Microscopy
Published on: May 3, 2011
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Deep-Learning-Based Algorithm for the Removal of Electromagnetic Interference Noise in Photoacoustic Endoscopic Image
Oleksandra Gulenko1, Hyunmo Yang2, KiSik Kim1
1Center for Photoacoustic Medical Instruments, Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Korea.
Sensors (Basel, Switzerland)
|May 28, 2022
Summary
Deep learning effectively removes electromagnetic interference (EMI) noise in photoacoustic endoscopy (PAE) imaging. A modified U-Net architecture successfully denoised PAE images, revealing detailed vasculature for improved clinical translation.
Area of Science:
- Biomedical Optics
- Medical Imaging
- Artificial Intelligence in Medicine
Background:
- Photoacoustic endoscopy (PAE) shows clinical promise but is hindered by electromagnetic interference (EMI) noise and limited signal-to-noise ratio (SNR).
- Unlike other imaging modalities, PAE's SNR is fundamentally limited by optical pulse energy safety constraints, and hardware limitations exacerbate EMI susceptibility.
- Existing methods struggle to mitigate EMI noise effectively in PAE systems, impeding technological advancement and clinical adoption.
Purpose of the Study:
- To investigate the feasibility of using deep learning for electromagnetic interference (EMI) noise removal in photoacoustic endoscopy (PAE) image processing.
- To compare the performance of different deep learning architectures against classical filtering methods for EMI noise reduction in PAE.
- To demonstrate the capability of an optimized deep learning model in generating high-fidelity PAE images for preclinical research.
Main Methods:
- Four fully convolutional neural network architectures (U-Net, Segnet, FCN-16s, FCN-8s) were evaluated for EMI noise removal in PAE data.
- A modified U-Net architecture was specifically developed and optimized for enhanced performance in denoising PAE images.
- The deep learning approach was benchmarked against traditional filter-based noise reduction techniques.
Main Results:
- The modified U-Net architecture demonstrated superior performance in removing EMI noise compared to other evaluated deep learning models and classical filters.
- The U-Net model successfully generated a denoised 3D vasculature map from PAE data.
- The denoised map clearly depicted fine, mesh-like capillary networks within the wall of a rat colorectum, showcasing the technique's resolution capabilities.
Conclusions:
- Deep learning, particularly a modified U-Net architecture, offers a powerful and effective strategy for mitigating EMI noise in photoacoustic endoscopy (PAE).
- This AI-driven approach significantly improves PAE image quality, enabling visualization of intricate vascular structures previously obscured by noise.
- The developed AI strategy holds broad applicability for photoacoustic tomography (PAT) systems, especially those with inherent low SNR and limited hardware-based EMI prevention, paving the way for improved diagnostic capabilities.
Keywords:
convolutional neural networkdeep learningelectromagnetic interference noiseimage-to-image regressionmicrovasculature visualizationnoise removalphotoacoustic endoscopyphotoacoustic microscopyphotoacoustic tomography
