Related Experiment Video
Updated: Sep 21, 2025

DNA Nanotubes as a Versatile Tool to Study Semiflexible Polymers
Published on: October 25, 2017
A statistical approach to knot confinement via persistent homology
Daniele Celoria1, Barbara I Mahler1
1Mathematical Institute, University of Oxford, Radcliffe Observatory, Andrew Wiles Building, Woodstock Rd, Oxford OX2 6GG, UK.
Abstract:
In this paper, we study how randomly generated knots occupy a volume of space using topological methods. To this end, we consider the evolution of the first homology of an immersed metric neighbourhood of a knot's embedding for growing radii. Specifically, we extract features from the persistent homology (PH) of the Vietoris-Rips complexes built from point clouds associated with knots. Statistical analysis of our data shows the existence of increasing correlations between geometric quantities associated with the embedding and PH-based features, as a function of the knots' lengths. We further study the variation of these correlations for different knot types. Finally, this framework also allows us to define a simple notion of deviation from ideal configurations of knots.
Related Concept Videos
Stability of structures
Three-Dimensional Analysis of Strain
Divergence and Stokes' Theorems
Structural Classification of Joints
A fibrous joint is where the adjacent bones are united by fibrous connective...
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation
On...
Stability of Conjugated Dienes
A comparison of the enthalpies of hydrogenation of dienes reveals that conjugated dienes release less heat on hydrogenation, rendering them more stable than their nonconjugated analogs.

