Related Experiment Video
Updated: Sep 21, 2025

Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
Published on: January 26, 2018
EZH2-Mediated H3K27me3 Targets Transcriptional Circuits of Neuronal Differentiation
Serena Buontempo1, Pasquale Laise1, James M Hughes1
1Department of Experimental Oncology, European Institute of Oncology IRCCS, Milan, Italy.
Abstract:
The Polycomb Repressive Complex 2 (PRC2) plays important roles in the epigenetic regulation of cellular development and differentiation through H3K27me3-dependent transcriptional repression. Aberrant PRC2 activity has been associated with cancer and neurodevelopmental disorders, particularly with respect to the malfunction of sits catalytic subunit EZH2. Here, we investigated the role of the EZH2-mediated H3K27me3 apposition in neuronal differentiation. We made use of a transgenic mouse model harboring Ezh2 conditional KO alleles to derive embryonic stem cells and differentiate them into glutamatergic neurons. Time course transcriptomics and epigenomic analyses of H3K27me3 in absence of EZH2 revealed a significant dysregulation of molecular networks affecting the glutamatergic differentiation trajectory that resulted in: (i) the deregulation of transcriptional circuitries related to neuronal differentiation and synaptic plasticity, in particular LTD, as a direct effect of EZH2 loss and (ii) the appearance of a GABAergic gene expression signature during glutamatergic neuron differentiation. These results expand the knowledge about the molecular pathways targeted by Polycomb during glutamatergic neuron differentiation.
Insights
Loss of EZH2 disrupts glutamatergic neuron differentiation by altering gene expression networks and promoting GABAergic signatures. This epigenetic regulator is crucial for normal neuronal development and function.
Area of Science:
- Neuroscience
- Epigenetics
- Molecular Biology
Background:
- Polycomb Repressive Complex 2 (PRC2) regulates gene expression via H3K27me3.
- Dysfunctional PRC2, especially EZH2, is linked to cancers and neurodevelopmental disorders.
- The role of EZH2 in H3K27me3 during neuronal differentiation requires further investigation.
Purpose of the Study:
- To investigate the role of EZH2-mediated H3K27 trimethylation in glutamatergic neuron differentiation.
- To analyze the impact of EZH2 loss on neuronal gene expression and epigenetic modifications.
Main Methods:
- Utilized a transgenic mouse model with conditional Ezh2 knockout alleles.
- Derived embryonic stem cells and differentiated them into glutamatergic neurons.
- Performed time-course transcriptomics and epigenomic analyses (H3K27me3).
Main Results:
- Absence of EZH2 led to significant dysregulation of molecular networks in glutamatergic differentiation.
- Identified deregulation of transcriptional circuits for neuronal differentiation and synaptic plasticity (LTD).
- Observed an emergent GABAergic gene expression signature during glutamatergic neuron differentiation.
Conclusions:
- EZH2 is critical for the proper epigenetic regulation of glutamatergic neuron differentiation.
- EZH2 loss directly impacts neuronal differentiation and synaptic plasticity pathways.
- Findings reveal novel insights into Polycomb group-mediated epigenetic control during neuronal development.
Related Concept Videos
Master Transcription Regulators
Chromatin Modification in iPS Cells
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Histone Modification
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Spreading of Chromatin Modifications
Writers
The writer...
Combinatorial Gene Control
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
RNA Polymerase II Accessory Proteins

