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Updated: Sep 21, 2025

Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
Horizontal transfer of a plasmid possessing mcr-1 marked with a single nucleotide mutation between Escherichia coli
Yoshimasa Yamamoto1, Ayano Higashi2, Kanoko Ikawa2
1United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu, Japan. yyamamot@gifu-u.ac.jp.
Objectives:
The widespread dissemination of phenotypic colistin-resistant (COR) bacteria in the community threatens public health. The horizontal gene transfer of the mobile colistin resistance gene via plasmids is thought to be one of the main mechanisms for dissemination. However, genotypic evidence to prove this in community settings is limited. This study used genome analysis to demonstrate the direct horizontal colistin resistance gene transfer via plasmids in isolates from the community.
Results:
A total of 19 isolates of COR Escherichia coli from stool specimens of 23 residents from seven households in the Vietnamese community were assessed in this study. The whole-genome sequence data of isolates were acquired using a combination of DNBSEQ short-reads and Nanopore long-read sequencing. Analysis of genomic data was performed using online tools such as Geneious. Analysis of the genomic information of COR E. coli isolates revealed that the isolates from two residents of different households had a similar IncP1 plasmid possessing mcr-1.1, marked with a single nucleotide mutation at the same position. The study provided direct evidence to prove that mcr was horizontally transmitted among bacteria in community residents.
Insights
Community spread of colistin-resistant bacteria is a public health threat. This study provides direct genomic evidence of horizontal gene transfer of the colistin resistance gene (mcr) via plasmids among residents in a Vietnamese community.
Area of Science:
- Microbiology
- Genomics
- Public Health
Background:
- Colistin resistance in bacteria is a growing global health concern.
- Mobile colistin resistance genes, particularly mcr, are frequently found on plasmids, facilitating their spread.
- Limited genotypic evidence exists for horizontal gene transfer of colistin resistance in community settings.
Purpose of the Study:
- To provide direct genotypic evidence of horizontal colistin resistance gene transfer via plasmids in a community setting.
- To investigate the dissemination of colistin-resistant Escherichia coli within households.
Main Methods:
- Whole-genome sequencing of 19 colistin-resistant Escherichia coli isolates from stool specimens of 23 community residents.
- Utilized a combination of DNBSEQ short-read and Nanopore long-read sequencing.
- Genomic data analysis using Geneious software.
Main Results:
- Identified similar IncP1 plasmids carrying the mcr-1.1 gene in isolates from two residents in different households.
- The mcr-1.1 gene on the plasmids showed a single nucleotide mutation at the same position in these isolates.
- Demonstrated direct horizontal transmission of the mcr gene among community residents.
Conclusions:
- The study provides direct genomic evidence for plasmid-mediated horizontal transfer of colistin resistance genes within a community.
- This finding highlights the importance of plasmids in the dissemination of antimicrobial resistance in community settings.
- Understanding these transmission dynamics is crucial for public health interventions against colistin-resistant bacteria.
Related Concept Videos
Conjugation
Mechanism of Conjugation
Transduction
Plasmids

