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Updated: Sep 20, 2025

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A Fluorogenic Peptide Cleavage Assay to Screen for Proteolytic Activity: Applications for coronavirus spike protein activation
Published on: January 9, 2019
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Structure and activity of human TMPRSS2 protease implicated in SARS-CoV-2 activation
Bryan J Fraser1,2, Serap Beldar3, Almagul Seitova3
1Department of Molecular Oncology, British Columbia Cancer Research Institute, Vancouver, British Columbia, Canada.
Nature Chemical Biology
|June 8, 2022
Summary
Transmembrane protease, serine 2 (TMPRSS2) is crucial for SARS-CoV-2 entry. This study reveals its structure and inhibition, offering a foundation for developing targeted drugs to block viral infection.
Area of Science:
- Biochemistry
- Structural Biology
- Virology
Background:
- Transmembrane protease, serine 2 (TMPRSS2) is essential for SARS-CoV-2 entry by processing the viral Spike protein.
- Understanding TMPRSS2's function is critical for developing antiviral strategies against SARS-CoV-2.
Purpose of the Study:
- To produce enzymatically active TMPRSS2 for characterization.
- To determine the co-crystal structure of TMPRSS2 with nafamostat.
- To provide a structural basis for TMPRSS2 inhibition and guide selective drug development.
Main Methods:
- Recombinant production of enzymatically active TMPRSS2.
- X-ray crystallography to obtain a 1.95 Å co-crystal structure with nafamostat.
- Biochemical assays to assess protease activity and inhibitor potency (IC50 values).
Main Results:
- Enzymatically active TMPRSS2 was produced and characterized.
- The crystal structure revealed insights into nafamostat's non-specific inhibition and TMPRSS2's substrate binding pocket.
- TMPRSS2 cleaves the SARS-CoV-2 Spike protein at multiple sites, including S1/S2.
- Potency of clinical protease inhibitors was ranked (1.4 nM to 120 µM IC50).
Conclusions:
- The study provides structural insights into TMPRSS2 function and inhibition.
- This work lays the groundwork for developing selective TMPRSS2 inhibitors to combat SARS-CoV-2 infection.
- Understanding TMPRSS2-Spike protein interactions is key for antiviral drug discovery.
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