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Related Experiment Video

Updated: Sep 6, 2025

Lymphocyte Isolation from Human Skin for Phenotypic Analysis and Ex Vivo Cell Culture
10:31

Lymphocyte Isolation from Human Skin for Phenotypic Analysis and Ex Vivo Cell Culture

Published on: April 8, 2016

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Processing human skin samples for single-cell assays.

Simona Saluzzo1, Laura Marie Gail2, Teresa Neuwirth3

  • 1Department of Dermatology, Medical University of Vienna, 1090 Vienna, Austria.

STAR Protocols
|June 30, 2022
PubMed
Summary
This summary is machine-generated.

This study presents an optimized protocol for isolating viable human skin cells for single-cell analysis. The method enhances the study of immune cells in skin, aiding research into infections, inflammation, and cancer.

Keywords:
Cell isolationHealth SciencesImmunologyRNAseqSequencingSingle Cell

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Area of Science:

  • Immunology
  • Dermatology
  • Genomics

Background:

  • Resident immune cells in human skin play crucial roles in immune responses.
  • Understanding these cells is vital for research into skin infections, inflammation, and cancer.
  • Existing methods for isolating skin cells can be improved for single-cell analysis.

Purpose of the Study:

  • To describe an optimized protocol for the rapid isolation of viable cells from human skin punch-biopsies.
  • To demonstrate the utility of this protocol by coupling it with single-cell RNA sequencing (scRNA-seq) and single-cell T-cell receptor sequencing (scTCR-seq).
  • To enable detailed characterization of transcriptional profiles and clonotypes of skin-resident and circulating T cells.

Main Methods:

  • Optimized protocol for isolating viable cells from 6-mm human skin punch-biopsies.
  • Coupling of single-cell RNA sequencing (scRNA-seq) and single-cell T-cell receptor sequencing (scTCR-seq).
  • Analysis of transcriptional profiles and T-cell clonotypes in skin and blood samples.

Main Results:

  • Successful isolation of viable immune cells from human skin biopsies.
  • Detailed characterization of transcriptional profiles of skin-resident and circulating T cells.
  • Identification of T-cell clonotypes in both skin and blood, providing insights into T-cell populations.

Conclusions:

  • The optimized protocol facilitates the study of human skin immune cells using single-cell assays.
  • This method enhances understanding of T-cell populations in skin and blood.
  • The protocol is an improvement over existing methods and supports research in skin immunity, infections, inflammation, and cancer.