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Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
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Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
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Parametric survival analysis models survival data by assuming a specific probability distribution for the time until an event occurs. The Weibull and exponential distributions are two of the most commonly used methods in this context, due to their versatility and relatively straightforward application.
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Data-Driven Simulation of Fisher-Kolmogorov Tumor Growth Models Using Dynamic Mode Decomposition.

Alex Viguerie1, Malú Grave2, Gabriel F Barros3

  • 1Department of Mathematics, Gran Sasso Science Institute, Viale Francesco Crispi 7, L'Aquila, AQ 67100, Italy.

Journal of Biomechanical Engineering
|June 30, 2022
PubMed
Summary

Dynamic-mode decomposition (DMD) accelerates personalized cancer modeling by creating low-dimensional representations. This machine learning approach significantly reduces computational costs for patient-specific tumor growth and treatment response predictions.

Keywords:
computational oncologycomputer simulationdynamic mode decompositionmechanistic modeling of cancerscientific machine learning

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Area of Science:

  • Computational oncology
  • Biophysics
  • Machine learning

Background:

  • Personalized cancer treatment relies on patient-specific computational models for predicting tumor growth and treatment response.
  • High computational costs of complex spatiotemporal cancer models hinder clinical applicability.
  • Dynamic-mode decomposition (DMD) is an unsupervised machine learning technique for system analysis and prediction.

Purpose of the Study:

  • To utilize DMD for constructing low-dimensional representations of cancer models to accelerate simulations.
  • To apply DMD to Fisher-Kolmogorov models for personalized tumor growth and treatment response forecasting.
  • To reduce the computational burden of patient-specific cancer simulations.

Main Methods:

  • Application of dynamic-mode decomposition (DMD) to Fisher-Kolmogorov models.
  • Development of low-dimensional representations for organ-scale biomechanistic cancer models.
  • Validation of DMD accuracy and error bounds over clinically relevant parameter spaces.

Main Results:

  • DMD implementation achieved short- to medium-term prediction errors under 1% and long-term errors under 20%.
  • Accurate and bounded-error reconstructions were obtained even with short training periods.
  • DMD successfully reconstructed tumor-induced host tissue deformation fields.

Conclusions:

  • DMD offers a data-driven approach to significantly reduce computational overhead in personalized cancer simulations.
  • This method facilitates faster tumor forecasting, parameter identification, uncertainty quantification, and treatment optimization.
  • The proposed approach enhances the clinical actionability of computational oncology tools.