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NeoRS: A Neonatal Resting State fMRI Data Preprocessing Pipeline.

Vicente Enguix1,2,3, Jeanette Kenley4, David Luck1,3

  • 1Department of Pediatrics, CHU Sainte-Justine, University of Montreal, Montreal, QC, Canada.

Frontiers in Neuroinformatics
|July 5, 2022
PubMed
Summary
This summary is machine-generated.

Researchers developed NeoRS, a novel processing pipeline for neonatal resting-state functional MRI (rsfMRI) data. This tool optimizes analysis for infant brains, improving the study of early brain development and connectivity.

Keywords:
fMRIneonatespipelinepreprocessingresting state

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Area of Science:

  • Neuroscience
  • Developmental Neuroscience
  • Medical Imaging

Background:

  • Resting state functional MRI (rsfMRI) is crucial for studying brain development and connectivity in neonates.
  • Existing adult fMRI pipelines are unsuitable for neonates due to differences in brain size, myelination, and non-collaborative nature.
  • Artifacts in neonatal rsfMRI data can compromise the interpretation of brain network interactions.

Purpose of the Study:

  • To develop and validate NeoRS, a specialized rsfMRI processing pipeline for neonates.
  • To address the unique challenges of neonatal brain imaging, including registration and motion correction.
  • To enable robust analysis of functional brain networks in the developing neonatal brain.

Main Methods:

  • NeoRS utilizes established neuroimaging tools (FSL, AFNI, SPM) adapted for neonatal brains.
  • Key steps include neonatal atlas registration, skull stripping, tissue segmentation, slice timing, and motion correction.
  • The pipeline incorporates optimized head motion management and quality control checkpoints.

Main Results:

  • NeoRS successfully processed neonatal rsfMRI data from the Baby Connectome Project.
  • Analysis revealed functional networks (e.g., default mode, visual, motor) consistent with previous neonatal studies.
  • The pipeline demonstrated robustness across multi-band and single-band acquisitions and is applicable to smaller datasets.

Conclusions:

  • NeoRS provides a robust, customizable, and open-source solution for neonatal rsfMRI data processing.
  • The pipeline facilitates the reliable investigation of intrinsic brain connectivity in early development.
  • NeoRS is available on GitHub, promoting wider research accessibility and collaboration.