Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Predicting Molecular Geometry02:27

Predicting Molecular Geometry

35.7K
VSEPR Theory for Determination of Electron Pair Geometries
35.7K
Molecular Models02:00

Molecular Models

40.2K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
40.2K
Thermodynamic Potentials01:26

Thermodynamic Potentials

962
Thermodynamic potentials are state functions that are extremely useful in analyzing a thermodynamic system. They have dimensions of energy. The four important thermodynamic potentials are internal energy, enthalpy, Helmholtz free energy, and Gibbs free energy. These thermodynamic potentials can be expressed using two of the following variables: pressure, volume, temperature, and entropy. These two variables are expressed as the rate of change of the thermodynamic potential with respect to other...
962
Molecular Comparison of Gases, Liquids, and Solids02:26

Molecular Comparison of Gases, Liquids, and Solids

43.1K
Particles in a solid are tightly packed together (fixed shape) and often arranged in a regular pattern; in a liquid, they are close together with no regular arrangement (no fixed shape); in a gas, they are far apart with no regular arrangement (no fixed shape). Particles in a solid vibrate about fixed positions (cannot flow) and do not generally move in relation to one another; in a liquid, they move past each other (can flow) but remain in essentially constant contact; in a gas, they move...
43.1K
Trends in Lattice Energy: Ion Size and Charge02:54

Trends in Lattice Energy: Ion Size and Charge

24.2K
An ionic compound is stable because of the electrostatic attraction between its positive and negative ions. The lattice energy of a compound is a measure of the strength of this attraction. The lattice energy (ΔHlattice) of an ionic compound is defined as the energy required to separate one mole of the solid into its component gaseous ions. For the ionic solid sodium chloride, the lattice energy is the enthalpy change of the process:
24.2K
Electronic Structure of Atoms02:28

Electronic Structure of Atoms

24.1K

An atom comprises protons and neutrons, which are contained inside the dense, central core called the nucleus, with electrons present around the nucleus. Taking into account the wave–particle duality of electrons and the uncertainty in position around the nucleus, quantum mechanics provides a more accurate model for the atomic structure. It describes atomic orbitals as the regions around the nucleus where electrons of discrete energy exist, characterized by four quantum...
24.1K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Organic Cation Influence on Organic-Inorganic Thermal Equilibration within 2D Metal Halide Perovskites.

Journal of the American Chemical Society·2026
Same author

Tunable Hidden Altermagnetic Spin Splitting in Layered Ruddlesden-Popper Oxides.

Nano letters·2026
Same author

Accelerated Discovery of Topological Conductors for Nanoscale Interconnects.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026
Same author

Pressure-Induced Three- to Two-Dimensional Structural Transition in Light Lanthanide Trichlorides.

Inorganic chemistry·2025
Same author

Predicted Ferromagnetism in Discovered Co-Bi Binary Phases.

Journal of the American Chemical Society·2025
Same author

A-Cation-Dependent Structure-Optical Property Relationships of Halide Perovskite Heterostructures with Complex Interfaces.

Journal of the American Chemical Society·2025
Same journal

Topological properties of curved spacetime extended Su-Schrieffer-Heeger model.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Influence of lattice expansion on Cr ferromagnetism in Ce<sub>(1-x)</sub>La<sub>(x)</sub>CrGe<sub>3</sub>compounds revealed by atomic-scale measurements.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Bond-length-driven magnetic transition in quasi-one-dimensional CrSb<i>X</i><sub>3</sub>(<i>X</i>=S, Se).

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Anelasticity in MgAl2O4 spinel due to cation order-disorder.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

The influence of water on the dynamics of alternating polymers P(C<sub>8</sub>EG<sub>4</sub>) and P(C<sub>4</sub>EG<sub>4</sub>) by broadband dielectric spectroscopy.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

How surface curvature shapes water nanodroplets in air.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
See all related articles

Related Experiment Video

Updated: Sep 5, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.3K

Benchmarking structural evolution methods for training of machine learned interatomic potentials.

Michael J Waters1, James M Rondinelli1

  • 1Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208, United States of America.

Journal of Physics. Condensed Matter : an Institute of Physics Journal
|July 7, 2022
PubMed
Summary
This summary is machine-generated.

Contour exploration (CE) and dimer-method (DM) searches generate more diverse and accurate training data for machine-learned interatomic potentials (MLIPs) than molecular dynamics (MD). This improves the robustness of MLIPs for materials science applications.

Keywords:
density functional theoryinteratomic potentialsmachine learningzirconia

More Related Videos

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.2K
Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.1K

Related Experiment Videos

Last Updated: Sep 5, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.3K
Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.2K
Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.1K

Area of Science:

  • Materials Science
  • Computational Chemistry
  • Machine Learning

Background:

  • Training data generation is crucial for developing accurate machine-learned interatomic potentials (MLIPs).
  • Molecular dynamics (MD) is a common method for evolving structures to sample configuration space for MLIP training data.
  • The diversity and robustness of training data significantly impact MLIP performance.

Purpose of the Study:

  • To benchmark contour exploration (CE) and dimer-method (DM) searches against MD for generating training data for MLIPs.
  • To evaluate the ability of different structural evolution methods to produce diverse and robust density functional theory (DFT) training datasets.
  • To formalize the process of generating initial structures for MLIP training data.

Main Methods:

  • Benchmarking structural evolution methods: MD, CE, and DM.
  • Utilizing Behler-Parrinello neural networks as MLIP models.
  • Employing the polymorph-rich zirconium-oxygen system as a benchmark.
  • Analyzing spatial descriptor diversity and statistical accuracy of generated datasets.

Main Results:

  • CE and DM searches generally outperform MD in generating diverse and robust DFT training data.
  • The choice of structural evolution method significantly impacts MLIP performance.
  • The zirconium-oxygen system provides a rigorous testbed for evaluating these methods.

Conclusions:

  • CE and DM are superior alternatives to MD for generating high-quality training data for MLIPs.
  • Improved training data leads to more accurate and reliable MLIPs.
  • Formalizing structure sourcing processes is essential for advancing MLIP development.