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Updated: Sep 5, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Knowledge Graph and Deep Learning-based Text-to-GQL Model for Intelligent Medical Consultation Chatbot
Pin Ni1, Ramin Okhrati1, Steven Guan2
1Institute of Finance and Technology, University College London, London, UK.
We introduce Text-to-GQL (Text2GQL), a new semantic parsing task for graph databases, enabling better human-machine communication. Our pipeline solution, using a pre-trained adapter, shows competitiveness in converting natural language questions into GQL statements.
Area of Science:
- Natural Language Processing
- Graph Databases
- Human-Robot Interaction
Background:
- Existing semantic parsing methods primarily focus on Text-to-SQL, leaving a gap for graph databases.
- Efficient human-machine communication requires translating natural language into structured queries.
- Medical Human-Robot Interactions (HRI) can benefit from improved natural language understanding for graph data.
Purpose of the Study:
- To propose the Text-to-GQL (Text2GQL) task for semantic parsing in graph databases.
- To develop a pipeline solution for the Text2GQL task to bridge the gap in existing research.
- To enhance medical HRI by enabling more direct human-machine communication with graph data.
Main Methods:
- A novel pipeline integrating a Language Model, a Pre-trained Adapter plug-in, and a Pointer Network.
- The Adapter is pre-trained on linking GQL schemas with utterances for knowledge introduction.
- The model copies tokens from utterances and generates GQL statements, with an adjustment mechanism for improved output.
Main Results:
- The proposed Text2GQL model demonstrates competitiveness on converted Text-to-SQL datasets (Spider, ATIS, GeoQuery, 39.net).
- The method proves practical for applications in medical scenarios.
- The pipeline effectively translates natural language questions into executable GQL statements.
Conclusions:
- The developed Text2GQL pipeline offers a viable solution for semantic parsing in graph databases.
- The approach enhances the directness and efficiency of human-machine communication.
- This work lays the foundation for advanced applications in fields like medical HRI.
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