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Updated: Sep 4, 2025

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Genome sequence of the novel freshwater Microcystis cyanophage Mwe-Yong1112-1
Ruqian Cai1,2, Dengfeng Li3, Wei Lin1,4
1School of Marine Sciences, Ningbo University, Ningbo, 315211, China.
Abstract:
The freshwater cyanophage Mwe-Yong1112-1 was isolated using Microcystis wesenbergii as a host and found to have an icosahedral head, about 45 nm in diameter, and a flexible tail, approximately 133 nm in length and 4.5 nm in width. The complete genome of the cyanophage is 39,679 bp in length with a G+C content of 66.6%. Mwe-Yong1112-1 shared the highest pairwise average nucleotide identity (ANI) value of 67.7% (below the ≥95% boundary to define a species) and the highest nucleotide sequence similarity of 17.48% (below the >70% boundary to define a genus) with the most closely related phage. In a proteomic tree, Mwe-Yong1112-1 and three unclassified phages formed a monophyletic clade between the families Saparoviridae and Pyrstoviridae, but Mwe-Yong1112-1 occupied a separate branch from the other three phages, suggesting that it represents a new evolutionary lineage. This study enriches the available information about freshwater cyanophages.
Insights
A new freshwater cyanophage, Mwe-Yong1112-1, was identified with unique genomic and proteomic characteristics. This discovery expands our understanding of cyanophage diversity and evolution in aquatic environments.
Area of Science:
- Microbiology
- Virology
- Aquatic Ecology
Background:
- Cyanophages are viruses that infect cyanobacteria, playing crucial roles in aquatic ecosystems.
- Understanding cyanophage diversity is essential for comprehending microbial dynamics and biogeochemical cycles.
- The freshwater cyanophage Mwe-Yong1112-1 was isolated and characterized.
Purpose of the Study:
- To isolate and characterize a novel freshwater cyanophage.
- To determine the genomic and morphological features of the cyanophage.
- To investigate the evolutionary placement of the cyanophage within the broader viral landscape.
Main Methods:
- Isolation of cyanophage Mwe-Yong1112-1 using Microcystis wesenbergii as a host.
- Morphological characterization via electron microscopy (head and tail dimensions).
- Whole-genome sequencing and analysis (genome size, G+C content).
- Comparative genomic analysis (Average Nucleotide Identity - ANI) and phylogenetic analysis (proteomic tree).
Main Results:
- Cyanophage Mwe-Yong1112-1 possesses an icosahedral head (45 nm) and a flexible tail (133 nm x 4.5 nm).
- The cyanophage genome is 39,679 bp with 66.6% G+C content.
- Low ANI (67.7%) and sequence similarity (17.48%) indicate Mwe-Yong1112-1 is distinct at species and genus levels.
- Proteomic analysis places Mwe-Yong1112-1 in a novel evolutionary lineage separate from known families.
Conclusions:
- Mwe-Yong1112-1 represents a new evolutionary lineage of freshwater cyanophages.
- The findings contribute valuable data to the study of cyanophage diversity.
- This research enhances the knowledge base of viruses impacting cyanobacteria in freshwater ecosystems.
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