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Updated: Sep 4, 2025

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
A new pathogenic POLG variant
S Nicholas Russo1,2, Ekta G Shah1, William C Copeland3
1The University of Texas McGovern Medical School, Department of Pediatrics, Division of Child and Adolescent Neurology, Houston, TX, USA.
Abstract:
POLG gene mutations are the most common causes of inherited mitochondrial disorders. The enzyme produced by this gene is responsible for the replication and repair of mitochondrial DNA. To date, around 300 pathogenic variants have been described in this gene. The resulting clinical outcomes of POLG mutations are widely variable in both phenotype and severity. There is considerable overlap in the phenotype of the so-called POLG syndromes with no clear genotype-phenotype correlation. Here we describe a newly discovered pathogenic variant in the POLG gene in a 7-year-old male that died of uncontrollable refractory status epilepticus. Genetic epilepsy panel sequencing identified two variants in the POLG gene, the common p.A467T pathological mutation and a novel p.S809R POLG variant found in trans with the p.A467T POLG that accompanied a severely reduced mitochondrial DNA level in the patient's tissues.
Insights
Mutations in the POLG gene cause inherited mitochondrial disorders. A novel POLG variant, p.S809R, was identified in a child with severe epilepsy and reduced mitochondrial DNA.
Area of Science:
- Genetics
- Molecular Biology
- Neurology
Background:
- Mutations in the *POLG* gene are the most frequent cause of inherited mitochondrial disorders, affecting mitochondrial DNA replication and repair.
- Over 300 pathogenic variants in *POLG* are known, leading to diverse clinical phenotypes with significant overlap and no clear genotype-phenotype correlation.
Observation:
- A 7-year-old male presented with intractable status epilepticus, leading to death.
- Genetic analysis revealed compound heterozygosity for the common *POLG* variant p.A467T and a novel variant, p.S809R.
Findings:
- The novel p.S809R *POLG* variant, found *in trans* with p.A467T, was associated with severely reduced mitochondrial DNA levels in patient tissues.
- This case highlights a new pathogenic variant in the *POLG* gene contributing to severe mitochondrial disease.
Implications:
- The discovery of the p.S809R variant expands the known spectrum of *POLG* mutations and their associated phenotypes.
- Further research into genotype-phenotype correlations in *POLG* disorders is warranted to improve diagnostic and prognostic capabilities.
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