Pediococcus pentosaceus IMI 507025 genome sequencing data

Area of Science:

• Microbiology
• Genomics
• Food Science

Background:

• *Pediococcus pentosaceus* is a lactic acid bacterium commonly used in food fermentation.
• Characterizing specific strains, like IMI 507025 from pickled cucumbers, is crucial for quality control and safety assessments.
• Genomic data provides comprehensive insights into a microorganism's traits and potential applications.

Purpose of the Study:

• To report the genome sequence of *Pediococcus pentosaceus* IMI 507025.
• To confirm the strain's identity and assess its safety profile.
• To make the genomic data publicly available for scientific research.

Main Methods:

• Whole-genome sequencing of *Pediococcus pentosaceus* IMI 507025.
• Bioinformatic analysis including genome assembly and gene prediction.
• Average Nucleotide Identity (ANI) calculation for strain identification.
• In silico screening for antimicrobial resistance and virulence genes.

Main Results:

• The genome size is 1,795,439 bp with 1,811 total genes (1,751 coding sequences).
• The strain was confirmed as *Pediococcus pentosaceus* with 99.5994% ANI identity to the type strain ATCC 33316.
• No antimicrobial resistance or virulence genes were detected, and no plasmids were found, indicating a safe strain.

Conclusions:

• The genome sequence of *Pediococcus pentosaceus* IMI 507025 has been successfully determined and characterized.
• The absence of resistance and virulence factors supports its safety for potential use in food applications.
• The deposited genomic data (PRJNA814992) contributes to the public microbial genome database.