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Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Fusion proteins mediate alternation of protein interaction networks in cancers
Sunanda Biswas Mukherjee1, Sumit Mukherjee1, Milana Frenkel-Morgenstern1
1Cancer Genomics and BioComputing of Complex Diseases Lab, Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Abstract:
Fusions of two different genes could lead to the production of chimeric RNAs, which could be translated into novel fusion (or chimeric) proteins. Fusion proteins often act as oncoproteins and drive cancer development, particularly in leukemia and lymphomas. Fusion proteins modify the existing protein-protein interaction (PPI) networks, which could eliminate some PPIs by removing protein domains in such fusions. This alternation of protein interaction networks could impact the signaling pathways and switch on the cancer-promoting activity that could drive the generation of cancer phenotypes and/or loss of controlled apoptosis. Thus, knowledge of the fusion proteins and their protein interaction networks could facilitate a deeper molecular understanding of cancer development, which could help to design new approaches for cancer therapies. Here, we discuss the structural features of fusion proteins and how they impact the PPI networks in cancers. Further, we discuss how to analyze the fusion protein-mediated alternation of PPI networks in cancers.
Insights
Gene fusions create novel proteins that drive cancer by altering protein interactions. Understanding these fusion proteins and their networks is key to developing new cancer therapies.
Area of Science:
- Molecular Biology
- Oncology
- Bioinformatics
Background:
- Gene fusions produce chimeric RNAs, leading to novel fusion proteins.
- Fusion proteins frequently function as oncoproteins, driving cancer development, especially in leukemia and lymphomas.
- These proteins can disrupt existing protein-protein interaction (PPI) networks by altering or removing protein domains.
Purpose of the Study:
- To discuss the structural characteristics of fusion proteins.
- To explain how fusion proteins impact protein-protein interaction networks in cancer.
- To outline methods for analyzing fusion protein-mediated alterations in cancer PPI networks.
Main Methods:
- Review of structural features of fusion proteins.
- Analysis of fusion protein impact on protein-protein interaction networks.
- Discussion of analytical approaches for fusion protein-mediated network alterations.
Main Results:
- Fusion proteins can modify cellular signaling pathways.
- Alterations in PPI networks by fusion proteins can promote cancer phenotypes.
- Disruption of controlled apoptosis is a potential consequence of altered PPI networks.
Conclusions:
- Understanding fusion protein structure and their effects on PPI networks is crucial for cancer research.
- Knowledge of fusion protein-mediated network changes can inform the design of novel cancer therapies.
- Analyzing these alterations offers insights into cancer development mechanisms.
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