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Co-immunoprecipitation Assay Using Endogenous Nuclear Proteins from Cells Cultured Under Hypoxic Conditions
Published on: August 2, 2018
NF-κB p65 Attenuates Cardiomyocyte PGC-1α Expression in Hypoxia
Inna Rabinovich-Nikitin1,2, Alexandra Blant3, Rimpy Dhingra1,2
1Institute of Cardiovascular Sciences, St. Boniface Hospital Albrechtsen Research Centre, Winnipeg, MB R2H 2A6, Canada.
Insights
Hypoxia reduces cardiac PGC-1α expression via NF-κB signaling. Nuclear factor-kappa B (NF-κB) p65 binds the PGC-1α promoter, inhibiting its transcription in cardiomyocytes during low oxygen conditions.
Area of Science:
- Cardiology
- Molecular Biology
- Cellular Physiology
Background:
- Hypoxia significantly impacts cardiomyocyte function, metabolism, and survival.
- Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is crucial for cardiomyocyte metabolism and mitochondrial health.
- PGC-1α is downregulated during hypoxia, but the mechanism remains unclear.
Purpose of the Study:
- To elucidate the mechanism by which hypoxia down-regulates PGC-1α expression in cardiomyocytes.
- To investigate the role of Nuclear Factor-kappa B (NF-κB) signaling in this process.
Main Methods:
- Primary rat and mouse cardiomyocytes were used.
- Electrophoretic mobility shift assays (EMSA) and luciferase assays were performed.
- RNA sequencing (RNA-seq) was conducted on p65 knockout mouse cardiomyocytes.
- NF-κB and histone deacetylase inhibitors (parthenolide, trichostatin A) were utilized.
Main Results:
- Hypoxia impaired mitochondrial energetics and increased nuclear localization of NF-κB p65.
- NF-κB p65 associated with the PGC-1α promoter, inhibiting its expression.
- Tumor necrosis factor α (TNFα) mimicked hypoxia effects, reducing PGC-1α expression and p65 binding.
- NF-κB inhibition reversed TNFα-induced PGC-1α downregulation.
- p65 knockout altered chromatin remodeling genes; histone deacetylase inhibition partially restored PGC-1α transactivation.
Conclusions:
- NF-κB signaling, particularly the p65 subunit, acts as a key inhibitor of PGC-1α expression in cardiomyocytes under hypoxic conditions.
- This study reveals a novel regulatory pathway linking hypoxia, NF-κB, and cardiomyocyte metabolic adaptation via PGC-1α.
Abstract:
Hypoxia exerts broad effects on cardiomyocyte function and viability, ranging from altered metabolism and mitochondrial physiology to apoptotic or necrotic cell death. The transcriptional coactivator peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is a key regulator of cardiomyocyte metabolism and mitochondrial function and is down-regulated in hypoxia; however, the underlying mechanism is incompletely resolved. Using primary rat cardiomyocytes coupled with electrophoretic mobility shift and luciferase assays, we report that hypoxia impaired mitochondrial energetics and resulted in an increase in nuclear localization of the Nuclear Factor-κB (NF-κB) p65 subunit, and the association of p65 with the PGC-1α proximal promoter. Tumor necrosis factor α (TNFα), an activator of NF-κB signaling, similarly reduced PGC-1α expression and p65 binding to the PGC-1α promoter in a dose-dependent manner, and TNFα-mediated down-regulation of PGC-1α expression could be reversed by the NF-κB inhibitor parthenolide. RNA-seq analysis revealed that cardiomyocytes isolated from p65 knockout mice exhibited alterations in genes associated with chromatin remodeling. Decreased PGC-1α promoter transactivation by p65 could be partially reversed by the histone deacetylase inhibitor trichostatin A. These results implicate NF-κB signaling, and specifically p65, as a potent inhibitor of PGC-1α expression in cardiac myocyte hypoxia.
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