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A rapid screening platform to coculture bacteria within tumor spheroids
Tetsuhiro Harimoto1, Dhruba Deb1, Tal Danino2,3,4
1Department of Biomedical Engineering, Columbia University, New York, NY, USA.
Nature Protocols
|July 29, 2022
Summary
A new bacteria spheroid coculture (BSCC) system enables the study of microbial cancer therapies. This platform facilitates the screening of engineered bacteria and their interactions with tumor cells in a physiologically relevant environment.
Area of Science:
- Microbiology
- Cancer Biology
- Synthetic Biology
Background:
- Living microbial cancer therapies are emerging, driven by tumor-colonizing bacteria and synthetic biology advancements.
- Engineering bacteria to produce therapeutics within tumors necessitates high-throughput screening platforms to assess bacterial candidates and their interactions with cancer cells.
Purpose of the Study:
- To describe a novel protocol for selectively growing bacteria within tumor spheroids for continuous, parallel profiling.
- To establish a robust platform for studying bacteria-tumor interactions and accelerating the development of engineered microbial therapies.
Main Methods:
- A bacteria spheroid coculture (BSCC) system was developed using 96-well low-adhesion plates.
- The protocol involves incubating tumor spheroids with bacteria, followed by washing and antibiotic selection to confine bacterial growth to the spheroid core.
- The system is compatible with time-lapse microscopy, staining assays, and histology for analyzing growth kinetics, viability, and spatial distribution.
Main Results:
- The BSCC system demonstrated stability for over 2 weeks under physiologically relevant conditions.
- The protocol is adaptable to various tumor cell types and bacterial species, with validation in animal models.
- The platform enables continuous monitoring and analysis of bacteria-tumor interactions.
Conclusions:
- The BSCC platform provides a simple, equipment-independent method for studying engineered bacteria in a tumor microenvironment.
- This system facilitates the rapid development and characterization of novel microbial cancer therapies.
- The BSCC platform is crucial for advancing the field of precision oncology with microbial interventions.

