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MOQUI: an open-source GPU-based Monte Carlo code for proton dose calculation with efficient data structure.

Hoyeon Lee1, Jungwook Shin2, Joost M Verburg1

  • 1Dept. of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, United States of America.

Physics in Medicine and Biology
|August 4, 2022
PubMed
Summary
This summary is machine-generated.

This study introduces moqui, an open-source GPU-based Monte Carlo code for accurate radiotherapy dose calculation. Moqui efficiently scores large quantities using a hash table, overcoming GPU memory limitations and achieving results comparable to TOPAS.

Keywords:
Monte Carlographic processing unitproton therapy

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Area of Science:

  • Medical Physics
  • Computational Science
  • Radiotherapy

Background:

  • Monte Carlo (MC) codes are crucial for accurate radiotherapy dose calculations, especially in proton therapy.
  • MC simulations require significant computational resources for statistical accuracy.
  • Graphic Processing Units (GPUs) offer computational speedups but have limited memory, posing challenges for large-scale simulations.

Purpose of the Study:

  • To develop an open-source GPU-based MC package capable of scoring large quantities with limited GPU memory.
  • To improve the computational efficiency of MC simulations in radiotherapy.

Main Methods:

  • Developed a novel GPU-based MC code named moqui.
  • Integrated a hash-table data structure to efficiently manage memory on the GPU.
  • Validated moqui against the TOPAS MC code using homogeneous and heterogeneous phantoms and clinical treatment plans.

Main Results:

  • Moqui demonstrated agreement with TOPAS within 2% for dose calculations, with >99% gamma pass rates (2 mm/2% criteria).
  • The hash-table approach enabled scoring of dose-influence matrix and dose-rate on a GPU using only 10 GB of memory.
  • This is a significant reduction compared to the >100 GB required by conventional array structures.

Conclusions:

  • Moqui offers an efficient and accurate solution for GPU-based MC dose calculations in proton therapy.
  • The hash-table implementation effectively addresses GPU memory limitations for large-scale simulations.
  • This advancement can accelerate radiotherapy treatment planning and research.