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Updated: Sep 2, 2025

A High-throughput Calcium-flux Assay to Study NMDA-receptors with Sensitivity to Glycine/D-serine and Glutamate
Published on: July 10, 2018
Temperature effect on calcium binding to aspartate and glutamate
Xiao-Chen Liu1, Jingyuan Liu1, Leif H Skibsted1
1Department of Food Science, University of Copenhagen, Rolighedsvej 26, DK-1958 Frederiksberg C, Denmark.
Aspartate (Asp) and glutamate (Glu) bind calcium ions differently. Asp binds calcium more strongly than Glu due to an entropy effect from ring formation, confirmed by DFT calculations and electrochemical studies.
Area of Science:
- Biochemistry
- Computational Chemistry
Background:
- Calcium ions are crucial for numerous biological processes.
- Amino acids like aspartate and glutamate play vital roles in biological systems.
- Understanding the binding mechanisms of calcium to amino acids is essential for deciphering biological functions.
Purpose of the Study:
- To investigate and compare the binding mechanisms of calcium ions to aspartate (Asp) and glutamate (Glu) mononegative ions.
- To elucidate the thermodynamic and structural differences in calcium binding between Asp and Glu.
Main Methods:
- Density Functional Theory (DFT) calculations were employed to model the binding interactions.
- Electrochemical methods were used to determine binding affinities.
- Temperature-dependent binding constants were measured to analyze thermodynamic parameters (ΔH⁰).
- Isothermal Titration Calorimetry (ITC) was used for qualitative validation.
Main Results:
- Aspartate binds calcium through both carboxylates, while glutamate binds through only its side chain carboxylate.
- Electrochemical measurements confirmed stronger calcium binding to Asp (Kass,c = 5.3 M⁻¹ at 37 °C) compared to Glu (Kass,c = 3.6 M⁻¹ at 37 °C).
- Thermodynamic analysis revealed a less negative enthalpy of binding for Asp (ΔH⁰ = -17 kJ·mol⁻¹) compared to Glu (ΔH⁰ = -21 kJ·mol⁻¹).
Conclusions:
- The stronger binding of calcium to Asp, despite a less favorable enthalpy, is attributed to a significant entropy gain.
- This entropy gain in Asp-calcium complexation is likely due to the formation of a stable ring structure.
- DFT calculations and experimental data consistently support these findings, highlighting the distinct calcium-binding modes of Asp and Glu.
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