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Preparation of Amines: Reductive Amination of Aldehydes and Ketones01:38

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Carbonyl compounds and primary amines undergo reductive amination first to produce imines, followed by secondary amines in the same reaction mixture, using selective reducing agents like sodium cyanoborohydride or sodium triacetoxyborohydride. Reductive amination produces different degrees of substitution of amines depending on the starting amine substrate.
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Phase I biotransformation reductive reactions are chemical processes that modify drugs by introducing or revealing polar functional groups via reduction. Enzymes called reductases catalyze these reactions, playing a pivotal role in drug metabolism by transforming lipophilic drugs into more polar, water-soluble metabolites for easy excretion. An essential type of reductive reaction is the carbonyl group reduction, where aldehydes and ketones are reduced to alcohols. An example is the...
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One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
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The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
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Introduction
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DNA isolation protocols can be fast and straightforward or complex and time-consuming depending on the type and quality of DNA required for further processing. For example, plasmid DNA extraction is a bit more complicated than genomic DNA extraction because of the need for an appropriate lysis method to separate plasmid DNA from gDNA during isolation. However, for specific applications, such as long-range DNA sequencing that require a good yield of high- quality DNA samples, we need to follow...
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Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
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On-DNA Reductive Amination and Alkylation.

Jing Chai1

  • 1Encoded Library Technologies/NCE Molecular Discovery, R&D Medicinal Science and Technology, GlaxoSmithKline, Cambridge, MA, USA. jing.5.chai@gsk.com.

Methods in Molecular Biology (Clifton, N.J.)
|September 9, 2022
PubMed
Summary
This summary is machine-generated.

On-DNA reductive amination and alkylation are efficient methods for creating carbon-nitrogen bonds using diverse chemical building blocks. These reactions are crucial for DNA-encoded library (DEL) synthesis.

Keywords:
DNA-encoded library (DEL)Reductive alkylationReductive amination

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Area of Science:

  • Organic Chemistry
  • Medicinal Chemistry
  • Chemical Biology

Background:

  • Carbon-nitrogen (C-N) bond formation is fundamental in synthetic chemistry.
  • DNA-encoded libraries (DELs) offer a powerful platform for drug discovery.
  • Efficient methods for modifying DNA-bound molecules are essential for DEL synthesis.

Purpose of the Study:

  • To highlight the utility of on-DNA reductive amination and alkylation for C-N bond formation.
  • To emphasize the role of these reactions in DNA-encoded library synthesis.
  • To showcase the versatility offered by commercially available building blocks.

Main Methods:

  • On-DNA reductive amination: reacting on-DNA aldehydes with amine building blocks.
  • On-DNA alkylation: reacting on-DNA amines with aldehyde building blocks.
  • Utilizing diverse, commercially available aldehyde and amine building blocks.

Main Results:

  • Established robust methods for C-N bond formation directly on DNA.
  • Demonstrated the broad applicability of these reactions using a wide array of building blocks.
  • Facilitated the synthesis of complex molecules within DNA-encoded libraries.

Conclusions:

  • On-DNA reductive amination and alkylation are highly effective strategies for DEL synthesis.
  • The availability of diverse building blocks significantly enhances the scope of DEL construction.
  • These methods provide a versatile toolkit for generating large and diverse chemical libraries for drug discovery.