Related Experiment Video
Updated: Aug 29, 2025

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
Published on: January 16, 2016
Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
Hirotoshi Hirai1, Ryosuke Jinnouchi1
1Toyota Central R&D Labs., Inc. 41-1, Yokomichi Nagakute Aichi 480-1192 Japan hirotoshih@mosk.tytlabs.co.jp.
Abstract:
We present an automated method that maps surface reaction pathways with no experimental data and with minimal human interventions. In this method, bias potentials promoting surface reactions are applied to enable statistical samplings of the surface reaction within the timescale of ab initio molecular dynamics (MD) simulations, and elementary reactions are extracted automatically using an extension of the method constructed for gas- or liquid-phase reactions. By converting the extracted elementary reaction data to directed graph data, MD trajectories can be efficiently mapped onto reaction pathways using a network analysis tool. To demonstrate the power of the method, it was applied to the steam reforming of methane on the Rh(111) surface and to propane reforming on the Pt(111) and Pt3Sn(111) surfaces. We discover new energetically favorable pathways for both reactions and reproduce the experimentally-observed materials-dependence of the surface reaction activity and the selectivity for the propane reforming reactions.
More Related Videos
Related Concept Videos
Predicting Reaction Outcomes
Measuring Reaction Rates
Reaction Mechanisms
For instance, the decomposition of ozone appears to follow a mechanism with two steps:
E1 Reaction: Kinetics and Mechanism
Radical Reactivity: Overview
Coupled Reactions
Energy in adenosine triphosphate or ATP molecules is easily accessible to do work. ATP powers the majority of energy-requiring cellular reactions....

