Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Molecular Models02:00

Molecular Models

39.9K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
39.9K
Predicting Molecular Geometry02:27

Predicting Molecular Geometry

35.0K
VSEPR Theory for Determination of Electron Pair Geometries
35.0K
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

98
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
98
Atomic Absorption Spectroscopy: Atomization Methods01:25

Atomic Absorption Spectroscopy: Atomization Methods

623
Atomic Absorption Spectroscopy (AAS) atomizes samples through flame atomization or electrothermal atomization. Flame atomization typically involves a nebulizer and spray chamber assembly to combine the sample with a fuel–oxidant mixture, creating a fine aerosol mist that enters a burner. Typically, the fuel and oxidant are combined in an approximately stoichiometric ratio. However, for atoms that are easily oxidized, a fuel-rich mixture may be more advantageous. Only about 5% of the...
623
Propagation of Uncertainty from Systematic Error01:10

Propagation of Uncertainty from Systematic Error

770
The atomic mass of an element varies due to the relative ratio of its isotopes. A sample's relative proportion of oxygen isotopes influences its average atomic mass. For instance, if we were to measure the atomic mass of oxygen from a sample, the mass would be a weighted average of the isotopic masses of oxygen in that sample. Since a single sample is not likely to perfectly reflect the true atomic mass of oxygen for all the molecules of oxygen on Earth, the mass we obtain from this...
770
Improving Translational Accuracy02:07

Improving Translational Accuracy

11.8K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Unprecedented robustness of physics-informed atomic energy models at and beyond room temperature.

Communications chemistry·2026
Same author

CHQuant: A Protocol for Quantifying Conformational Sampling with Convex Hulls.

Journal of chemical theory and computation·2025
Same author

Accurate prediction of electron correlation energies of topological atoms by delta learning from the Müller approximation.

The Journal of chemical physics·2025
Same author

Modeling Many-Body Interactions in Water with Gaussian Process Regression.

The journal of physical chemistry. A·2024
Same author

Toward Gaussian Process Regression Modeling of a Urea Force Field.

The journal of physical chemistry. A·2024
Same author

Transfer learning of hyperparameters for fast construction of anisotropic GPR models: design and application to the machine-learned force field FFLUX.

Physical chemistry chemical physics : PCCP·2024
Same journal

How Do DICER1 Syndrome Mutations Disrupt Catalysis? Unveiling Dicer Metal Binding Architecture and Mechanism of Action Using MD Simulations and QM/MM Calculations.

Journal of computational chemistry·2026
Same journal

Quadruple Bonding of Alkaline Earth Atoms in AeCLi<sub>4</sub> (Ae = Be - Ba) Complexes.

Journal of computational chemistry·2026
Same journal

From SMILES Codes for Reactants and Products to Transition States With VeloxChem.

Journal of computational chemistry·2026
Same journal

Electric-Field Effects on Structure and Conductance in a Cytochrome b<sub>562</sub> Junction.

Journal of computational chemistry·2026
Same journal

Quantum Chemistry Study of Luminescence Quenching in the Eu<sup>3+</sup>@UiO-67 Sensor Induced by Ag<sup>+</sup> Ions.

Journal of computational chemistry·2026
Same journal

Projection-Modified Direct Inversion in the Iterative Subspace: A Memory-Efficient Convergence Method for the Extended Molecular Ornstein-Zernike Theory.

Journal of computational chemistry·2026
See all related articles

Related Experiment Video

Updated: Aug 27, 2025

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
07:31

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches

Published on: September 1, 2023

2.4K

Producing chemically accurate atomic Gaussian process regression models by active learning for molecular simulation.

Matthew J Burn1,2, Paul L A Popelier1,2

  • 1Manchester Institute of Biotechnology, The University of Manchester, Manchester, UK.

Journal of Computational Chemistry
|September 27, 2022
PubMed
Summary
This summary is machine-generated.

Chemically accurate machine learning potentials are crucial for advanced force fields. This study demonstrates an active learning method to efficiently develop accurate Gaussian process regression models for complex molecules.

Keywords:
FFLUXGaussian process regressionIQAQTAIMkrigingmachine learningparticle swarm optimizationquantum chemical topology

More Related Videos

Interactive Molecular Model Assembly with 3D Printing
06:15

Interactive Molecular Model Assembly with 3D Printing

Published on: August 13, 2020

10.2K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

462

Related Experiment Videos

Last Updated: Aug 27, 2025

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
07:31

Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches

Published on: September 1, 2023

2.4K
Interactive Molecular Model Assembly with 3D Printing
06:15

Interactive Molecular Model Assembly with 3D Printing

Published on: August 13, 2020

10.2K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

462

Area of Science:

  • Computational chemistry
  • Materials science

Background:

  • Machine learning (ML) is vital for developing sophisticated molecular force fields.
  • Chemically accurate ML potentials are essential as force field applications expand.
  • Gaussian process regression (GPR) is a powerful ML technique for potential development.

Purpose of the Study:

  • To demonstrate a method for developing chemically accurate GPR models.
  • To apply active learning for efficient model development across complex molecules.
  • To extend previous work on active learning for force field accuracy.

Main Methods:

  • Utilizing a per-atom active learning approach.
  • Developing Gaussian process regression models.
  • Testing models on an increasingly complex set of molecules, including peptide-capped glycine.

Main Results:

  • The active learning technique significantly reduces computational time (CPU time).
  • The method successfully generates chemically accurate ML potentials.
  • Demonstrated progression towards more accurate models with less computational cost.

Conclusions:

  • The per-atom active learning approach enables efficient development of accurate ML potentials.
  • This method is effective for complex molecular systems like peptide-capped glycine.
  • The study highlights the potential of active learning in advancing force field development.