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Aza-PNA: Engineering E-Rotamer Selectivity Directed by Intramolecular H-bonding
Abdul Shiraj1, Raghunath O Ramabhadran2, Krishna N Ganesh1,2
1Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr Homi Bhabha Road, Pune 411008, Maharashtra, India.
Abstract:
The replacement of α(CH2) by NH in monomers of standard aeg PNA and its homologue β-ala PNA leads to respective aza-PNA monomers (1 and 2) in which the NαH can form either an 8-membered H-bonded ring with folding of the backbone (DMSO and water) or a 5-membered NαH─αCO (water) to stabilize E-type rotamers. Such aza-PNA oligomers with exclusive E rotamers and intraresidue backbone H-bonding can modulate its DNA/RNA binding and assembling properties.
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