Related Experiment Video
Updated: Aug 24, 2025

Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
PToPI: A Comprehensive Review, Analysis, and Knowledge Representation of Binary Classification Performance
Gürol Canbek1,2, Tugba Taskaya Temizel2, Seref Sagiroglu3
1Pointr, Ankara, Turkey.
Abstract:
Although few performance evaluation instruments have been used conventionally in different machine learning-based classification problem domains, there are numerous ones defined in the literature. This study reviews and describes performance instruments via formally defined novel concepts and clarifies the terminology. The study first highlights the issues in performance evaluation via a survey of 78 mobile-malware classification studies and reviews terminology. Based on three research questions, it proposes novel concepts to identify characteristics, similarities, and differences of instruments that are categorized into 'performance measures' and 'performance metrics' in the classification context for the first time. The concepts reflecting the intrinsic properties of instruments such as canonical form, geometry, duality, complementation, dependency, and leveling, aim to reveal similarities and differences of numerous instruments, such as redundancy and ground-truth versus prediction focuses. As an application of knowledge representation, we introduced a new exploratory table called PToPI (Periodic Table of Performance Instruments) for 29 measures and 28 metrics (69 instruments including variant and parametric ones). Visualizing proposed concepts, PToPI provides a new relational structure for the instruments including graphical, probabilistic, and entropic ones to see their properties and dependencies all in one place. Applications of the exploratory table in six examples from different domains in the literature have shown that PToPI aids overall instrument analysis and selection of the proper performance metrics according to the specific requirements of a classification problem. We expect that the proposed concepts and PToPI will help researchers comprehend and use the instruments and follow a systematic approach to classification performance evaluation and publication.
Related Concept Videos
Receiver Operating Characteristic Plot
Classification of Systems-I
Homogeneity dictates that if an input x(t) is multiplied by a constant c, the output y(t) is multiplied by the same constant. Mathematically, this is expressed as:
Review and Preview
Percentiles are a type of fractile that partition data into...
Classification of Systems-II
Classification of Signals
A continuous-time signal holds a value at every instant in time, representing information seamlessly. In contrast, a discrete-time signal holds values only at specific moments, often denoted as x(n), where...
Sensitivity, Specificity, and Predicted Value
Sensitivity is the...

