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Updated: Aug 23, 2025

Microcrystal Electron Diffraction of Small Molecules
Published on: March 15, 2021
Absolute configuration determination of SMTP-7 via microcrystal electron diffraction (MicroED).
1Small Molecule Drug Product Development, Biogen, 115 Broadway, Cambridge, MA 02142, USA. bo.wang2@biogen.com.
Determining the absolute configuration of the drug candidate SMTP-7, which has five chiral centers, was achieved using Microcrystal Electron Diffraction (MicroED). This method successfully determined the configuration even with limited sample quantities.
Area of Science:
- Crystallography
- Drug Discovery
- Structural Chemistry
Background:
- Absolute configuration determination is crucial for drug candidates.
- The drug candidate SMTP-7 possesses five chiral centers, making its configuration analysis complex.
- Limited sample availability poses a significant challenge for traditional methods.
Purpose of the Study:
- To determine the absolute configuration of the drug candidate SMTP-7.
- To demonstrate the efficacy of Microcrystal Electron Diffraction (MicroED) for complex molecules.
- To showcase advanced MicroED techniques for challenging crystallographic problems.
Main Methods:
- Microcrystal Electron Diffraction (MicroED) analysis was employed.
- Kinematical refinement with additional chiral information was utilized.
- Direct dynamical refinement approach was applied.
Main Results:
- The absolute configuration of SMTP-7 was successfully assigned.
- MicroED proved effective for analyzing quantity-limited and complex molecules.
- Both kinematical and dynamical refinement approaches yielded unambiguous results.
Conclusions:
- MicroED is a powerful tool for absolute configuration determination of complex drug candidates.
- Advanced MicroED techniques overcome limitations of sample quantity and crystallizability.
- This study validates MicroED's utility in drug discovery and structural elucidation.
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