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Updated: Aug 23, 2025

Identifying PD-1/PD-L1 Inhibitors with Surface Plasmon Resonance Technology
Published on: May 2, 2025
Tumor-intrinsic SIRPA promotes sensitivity to checkpoint inhibition immunotherapy in melanoma
Zhicheng Zhou1, Mei-Ju May Chen1, Yikai Luo2
1Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Abstract:
Checkpoint inhibition immunotherapy has revolutionized cancer treatment, but many patients show resistance. Here we perform integrative transcriptomic and proteomic analyses on emerging immuno-oncology targets across multiple clinical cohorts of melanoma under anti-PD-1 treatment, on both bulk and single-cell levels. We reveal a surprising role of tumor-intrinsic SIRPA in enhancing antitumor immunity, in contrast to its well-established role as a major inhibitory immune modulator in macrophages. The loss of SIRPA expression is a marker of melanoma dedifferentiation, a key phenotype linked to immunotherapy efficacy. Inhibition of SIRPA in melanoma cells abrogates tumor killing by activated CD8+ T cells in a co-culture system. Mice bearing SIRPA-deficient melanoma tumors show no response to anti-PD-L1 treatment, whereas melanoma-specific SIRPA overexpression significantly enhances immunotherapy response. Mechanistically, SIRPA is regulated by its pseudogene, SIRPAP1. Our results suggest a complicated role of SIRPA in the tumor ecosystem, highlighting cell-type-dependent antagonistic effects of the same target on immunotherapy.
Insights
Tumor cells expressing SIRPA enhance anti-cancer immunity, contrary to its known immune-suppressing role. Loss of SIRPA in melanoma predicts poor response to immunotherapy, suggesting a novel therapeutic target.
Area of Science:
- Immunology
- Oncology
- Genomics
Background:
- Checkpoint inhibition immunotherapy, particularly anti-PD-1 therapy, has transformed cancer treatment but faces challenges due to patient resistance.
- Understanding novel targets within the tumor microenvironment is crucial for improving immunotherapy efficacy.
Purpose of the Study:
- To investigate the role of SIRPA (Signal Regulatory Protein Alpha) in melanoma response to anti-PD-1 immunotherapy.
- To explore the mechanisms underlying SIRPA's function in tumor-intrinsic immunity.
Main Methods:
- Integrative transcriptomic and proteomic analyses on bulk and single-cell levels across multiple melanoma clinical cohorts.
- Co-culture systems with melanoma cells and CD8+ T cells.
- In vivo studies using mouse models with SIRPA-deficient and SIRPA-overexpressing melanoma tumors.
Main Results:
- Tumor-intrinsic SIRPA enhances antitumor immunity, contrasting its known inhibitory role in macrophages.
- Loss of SIRPA expression correlates with melanoma dedifferentiation and predicts poor immunotherapy response.
- SIRPA deficiency in melanoma abrogates T cell-mediated tumor killing and immunotherapy efficacy in vivo.
- SIRPA expression is regulated by its pseudogene, SIRPAP1.
Conclusions:
- SIRPA plays a complex, cell-type-dependent role in the tumor ecosystem, exhibiting antagonistic effects on immunotherapy.
- Targeting tumor-intrinsic SIRPA represents a potential strategy to overcome resistance and enhance immunotherapy response in melanoma.
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