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The Use of Reverse Phase Protein Arrays RPPA to Explore Protein Expression Variation within Individual Renal Cell Cancers
Published on: January 22, 2013
Identifying tumor antigens and immune subtypes of renal cell carcinoma for immunotherapy development
Xinglin Chen1, Tongtong Zhang1, Xinyu Zhai1
1Urology Centre, Shuguang Hospital Affiliated to Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Abstract:
Renal cell carcinoma (RCC) is one of the leading causes of death in men. Messenger ribonucleic acid (mRNA) vaccines may be an attractive means to achieve satisfactory results. Cancer immunotherapy is a promising cancer treatment strategy. However, immunotherapy is not widely used in renal cell carcinoma, as only a few patients show a positive response. The present study aimed to identify potential antigens associated with renal cell carcinoma to develop an anti-renal cell carcinoma mRNA vaccine. Moreover, the immune subtypes of renal cell carcinoma cells were determined. The Cancer Genome Atlas (TCGA) analysis revealed gene expression profiles and clinical information. Antigen-presenting cells infiltrated the immune system using Tumor Immune Estimation Resource (TIMER) tool (http://timer.cistrome.org/). GDSC (Genomics of Drug Sensitivity in Cancer) database were used to estimate drug sensitivity. The 13 immune-related genes discovery could be targets for immunotherapy in renal cell carcinoma patients, as they were associated with a better prognosis and a higher level of antigen-presenting cells. These immune subtypes have significant relationships with immunological checkpoints, immunogenic cell death regulators, and RCC prognostic variables. Furthermore, DBH-AS1 was identified as a potential antigen for developing an mRNA vaccine. The CCK8 assay demonstrated that the proliferative capacity of 786-O and Caki-1 cells overexpressing DBH-AS1 was higher than in the control group. In addition, transwell assay revealed that 786-O and Caki-1 cells overexpressing DBH-AS1 showed higher invasion capacity compared with control. This study provides a theoretical basis for the development of mRNA vaccines. Our findings suggest that DBH-AS1 could be potential antigens for developing RCC mRNA vaccines.
Insights
Researchers identified 13 immune-related genes and DBH-AS1 as potential targets for renal cell carcinoma (RCC) immunotherapy. These findings support the development of novel messenger ribonucleic acid (mRNA) vaccines for treating RCC.
Area of Science:
- Oncology
- Immunotherapy
- Genomics
Background:
- Renal cell carcinoma (RCC) remains a significant cause of cancer mortality.
- Current cancer immunotherapy shows limited efficacy in RCC patients.
- Messenger ribonucleic acid (mRNA) vaccines offer a promising therapeutic avenue.
Purpose of the Study:
- To identify potential renal cell carcinoma (RCC) antigens for mRNA vaccine development.
- To determine RCC immune subtypes and their clinical significance.
- To explore novel immunotherapy targets for RCC.
Main Methods:
- Utilized The Cancer Genome Atlas (TCGA) for gene expression and clinical data analysis.
- Employed the Tumor Immune Estimation Resource (TIMER) to assess antigen-presenting cell infiltration.
- Leveraged the Genomics of Drug Sensitivity in Cancer (GDSC) database for drug sensitivity analysis.
- Conducted CCK8 and transwell assays to evaluate the functional impact of DBH-AS1.
Main Results:
- Identified 13 immune-related genes associated with improved prognosis and higher antigen-presenting cell levels in RCC.
- Characterized RCC immune subtypes linked to immunological checkpoints and prognostic variables.
- DBH-AS1 was identified as a potential antigen for RCC mRNA vaccine development.
- Overexpression of DBH-AS1 increased proliferation and invasion in RCC cell lines (786-O and Caki-1).
Conclusions:
- The study provides a theoretical foundation for developing RCC-specific mRNA vaccines.
- DBH-AS1 emerges as a promising antigen candidate for novel RCC mRNA vaccine strategies.
- Targeting identified immune-related genes may enhance immunotherapy response in RCC patients.
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