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Updated: Aug 18, 2025

Development of a Hepatitis B Virus Reporter System to Monitor the Early Stages of the Replication Cycle
Published on: February 1, 2017
Nonproductive Hepatitis B Virus Covalently Closed Circular DNA Generates HBx-Related Transcripts from the
Bo Peng1,2, Zhiyi Jing2, Zhongmin Zhou2,3
1Graduate program in School of Life Sciences, Peking University, Beijing, China.
Insights
Hepatitis B virus (HBV) infection persists due to active cccDNA transcription in single liver cells. Superinfection can activate nonproductive transcription, and cccDNA can produce HBx protein to drive further viral gene expression.
Area of Science:
- Virology
- Hepatology
- Molecular Biology
Background:
- Hepatitis B virus (HBV) infection is a global health concern.
- Persistent HBV relies on cccDNA transcription in hepatocytes, poorly understood at the single-cell level.
- Current treatments suppress but rarely cure HBV, highlighting the need for functional cures.
Purpose of the Study:
- To investigate HBV cccDNA transcription dynamics in single primary human hepatocytes.
- To characterize viral transcript profiles and their regulation at the single-cell level.
- To elucidate mechanisms of cccDNA transcription activation and HBx protein's role.
Main Methods:
- Isolation of primary human hepatocytes from HBV-infected liver-humanized FRG mice.
- 5' transcriptome sequencing (RNA-seq) to analyze cccDNA transcripts in single cells.
- Cell infection assays using recombinant HBV to study transcription activation.
Main Results:
- Single-cell RNA-seq identified distinct HBV transcript profiles, including full transcription or X gene-only transcription.
- Nonproductive cccDNA transcription can be activated by superinfection with incoming HBV.
- cccDNA can be transcribed to produce HBx protein, essential for other viral gene transcription.
Conclusions:
- HBV cccDNA transcription is heterogeneous at the single-cell level.
- Superinfection and HBx production are key mechanisms in HBV persistence and replication.
- Findings offer insights for developing strategies to achieve functional cure of chronic HBV infection.
Abstract:
Hepatitis B virus (HBV) infection remains a public health problem worldwide. Persistent HBV infection relies on active transcription of the covalently closed circular DNA (cccDNA) in hepatocytes, which is less understood at the single-cell level. In this study, we isolated primary human hepatocytes from liver-humanized FRG mice infected with HBV and examined cccDNA transcripts in single cells based on 5' end sequencing. Our 5' transcriptome sequencing (RNA-seq) analysis unambiguously assigns different viral transcripts with overlapping 3' sequences and quantitatively measures viral transcripts for structural genes (3.5 kb, 2.4 kb, and 2.1 kb) and the nonstructural X gene (0.7 kb and related) in single cells. We found that an infected cell either can generate all viral transcripts, signifying active transcription, or presents only transcripts from the X gene and its associated enhancer I domain and no structural gene transcripts. Results from cell infection assays with recombinant HBV show that nonproductive transcription of cccDNA can be activated by incoming virus through superinfection. Moreover, upon HBV infection, cccDNA apparently can be transcribed in the absence of HBx and produces HBx, needed for productive transcription of other viral genes. These results shed new light on cccDNA transcription at the single-cell level and provide insights useful for improving the treatment strategy against chronic HBV infection. IMPORTANCE Hepatitis B virus (HBV) infection can be effectively suppressed but rarely cured by available drugs. Chronic HBV infection is based on persistence of covalently closed circular DNA (cccDNA) and continuous infection and reinfection with HBV in the liver. Understanding transcriptional regulation of cccDNA will help to achieve permanent transcriptional silencing, i.e., functional cure of HBV. In our study, we found that an infected cell either can generate all viral transcripts, signifying active transcription, or presents only transcripts from the X gene and its associated enhancer I domain and no structural gene transcripts. The nonproductive transcription of cccDNA can be activated by incoming virus through superinfection. Upon an infection, cccDNA apparently can be transcribed in the absence of HBx to produce HBx, necessary for subsequent transcription of other HBV genes. Our studies shed new light on the mechanism of HBV infection and may have implications for a functional cure regimen for HBV.
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