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Updated: Aug 17, 2025

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LeafJ: An ImageJ Plugin for Semi-automated Leaf Shape Measurement
Published on: January 21, 2013
28.6K
Rapid character scoring and tabulation of large leaf-image libraries using Adobe Bridge.
Gabriella Rossetto-Harris1, Elena Stiles1,2, Peter Wilf1
1Department of Geosciences, Pennsylvania State University University Park Pennsylvania 16802 USA.
Applications in Plant Sciences
|December 15, 2022
Summary
This study introduces a new method for coding and extracting specimen data directly into digital images using searchable keywords. This approach simplifies paleobotany research by linking character data to images, enhancing digital specimen analysis.
Area of Science:
- Paleobotany
- Digital specimen research
Background:
- Digital image libraries are crucial for specimen-based research.
- Current methods for coding and extracting metadata are complex and often require downsampling or platform switching.
- Existing workflows lack direct links between character data and images.
Purpose of the Study:
- To demonstrate a method for coding and embedding standard paleobotanical characters into digital images.
- To provide a workflow that links character data directly to full-resolution images.
- To offer an intuitive digital tool that complements in-person specimen analysis.
Main Methods:
- Coding standard leaf architecture and insect-damage characters into images.
- Utilizing Adobe Bridge for applying customizable and searchable keywords directly to images.
- Employing scripts for reversible data extraction and matrix formatting.
Main Results:
- Keywords are applied directly and reversibly to individual full-resolution images.
- Data can be extracted and formatted into a matrix using scripts.
- The method is intuitive and acts as a digital mimic of in-person specimen analysis.
Conclusions:
- The developed approach simplifies the coding and extraction of specimen metadata.
- Keywords can be customized for various data types requiring visual sorting.
- This method enhances the utility of digital image libraries for specimen-based research.

