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Updated: Aug 17, 2025

Generation of Single-Cell Suspensions from Mouse Neural Tissue
Published on: July 7, 2009
Generation of single-cell and single-nuclei suspensions from embryonic and adult mouse brains
Dongjin R Lee1, Yajun Zhang1, Christopher T Rhodes1
1Unit on Cellular and Molecular Neurodevelopment, Eunice Kennedy Shriver National Institute for Child Health and Human Development (NICHD), National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Abstract:
Efficient protocols to generate single-cell and single-nuclei suspensions are critical for the burgeoning field of single-cell/single-nuclei sequencing. Here we describe procedures to generate single-cell and single-nuclei suspensions from embryonic and adult mouse brains. This protocol can be modified for any brain region and/or neural cell type. For complete details on the use and execution of this protocol, please refer to Lee et al. (2022),1 Rhodes et al. (2022),2 Mahadevan et al. (2021),3 Ekins et al. (2020),4 and Wester et al. (2019).5.

