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Updated: Aug 16, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
The Mediator complex subunit MED25 interacts with HDA9 and PIF4 to regulate thermomorphogenesis
Umidjon Shapulatov1,2, Martijn van Zanten3, Mark van Hoogdalem1
1Laboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.
Mediator25 (MED25) recruits HISTONE DEACETYLASE 9 (HDA9) to auxin genes, promoting plant growth in warm temperatures. MED25 bridges PHYTOCHROME INTERACTING FACTOR 4 (PIF4) and HDA9, influencing thermomorphogenesis.
Area of Science:
- Plant Biology
- Molecular Biology
- Genetics
Background:
- Thermomorphogenesis involves hypocotyl elongation driven by auxin biosynthesis genes like YUCCA8, induced by PHYTOCHROME INTERACTING FACTOR 4 (PIF4).
- HISTONE DEACETYLASE 9 (HDA9) facilitates PIF4 binding to YUCCA8 under warmth by depleting histone H2A.Z, but HDA9's recruitment mechanism is unclear.
- The Mediator complex links transcription factors to basal transcription machinery; Mediator25 (MED25) is a component.
Purpose of the Study:
- To elucidate the role of MED25 in thermomorphogenesis and its interaction with PIF4 and HDA9.
- To understand how HDA9 is recruited to PIF4 target genes like YUCCA8.
Main Methods:
- Analysis of Mediator25 (MED25) mutants in Arabidopsis thaliana.
- Assessing YUCCA8 expression at 27°C.
- Chromatin immunoprecipitation to detect MED25 association with the YUCCA8 locus.
- Co-immunoprecipitation to study protein interactions between MED25, PIF4, and HDA9.
- Genetic analysis of MED25 and HDA9 pathways.
- Protein stability assays for HDA9 in the presence of MED25.
Main Results:
- MED25 mutants showed reduced hypocotyl elongation and YUCCA8 expression at 27°C.
- MED25 associated with the YUCCA8 locus under warmth and interacted with both PIF4 and HDA9.
- MED25 and HDA9 function in the same pathway, and MED25 destabilizes HDA9 protein.
Conclusions:
- MED25 acts as a scaffold, recruiting HDA9 to the YUCCA8 locus by interacting with PIF4.
- This recruitment mechanism is crucial for HDA9-mediated histone modification and YUCCA8 induction during thermomorphogenesis.
- MED25 plays a key role in regulating plant responses to temperature changes.
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