Related Experiment Video

Updated: Aug 14, 2025

Temporal Ordering of Dynamic Expression Data from Detailed Spatial Expression Maps
11:52

Temporal Ordering of Dynamic Expression Data from Detailed Spatial Expression Maps

Published on: February 9, 2017

6.0K

Revisiting regulatory coherence: accounting for temporal bias in plant gene co-expression analyses

Haoran Cai1, David L Des Marais1

  • 1Department of Civil and Environmental Engineering, MIT, 15 Vassar St., Cambridge, MA, 02139, USA.

The New Phytologist
|January 9, 2023
PubMed
Abstract

No abstract available in PubMed .

Keywords:
Oryza sativawgcnaco-expression networkdynamic correlationgene regulationregulatory decoherencestress responsetemporal bias

More Related Videos

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

19.8K
Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants
08:33

Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants

Published on: August 5, 2020

8.2K

Related Experiment Videos

Last Updated: Aug 14, 2025

Temporal Ordering of Dynamic Expression Data from Detailed Spatial Expression Maps
11:52

Temporal Ordering of Dynamic Expression Data from Detailed Spatial Expression Maps

Published on: February 9, 2017

6.0K
Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

19.8K
Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants
08:33

Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants

Published on: August 5, 2020

8.2K

Related Concept Videos

Biological Clocks and Seasonal Responses02:45

Biological Clocks and Seasonal Responses

34.8K
The circadian—or biological—clock is an intrinsic, timekeeping, molecular mechanism that allows plants to coordinate physiological activities over 24-hour cycles called circadian rhythms. Photoperiodism is a collective term for the biological responses of plants to variations in the relative lengths of dark and light periods. The period of light-exposure is called the photoperiod.
34.8K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

4.7K
4.7K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.5K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.5K

Articles linked to this work by shared authors, journal, and citation graph.

Consistent and idiosyncratic pleiotropy in shaping genetic correlations.

Molecular biology and evolution·2026

Persistent selection on size explains micro- and macroevolutionary alignments in fly wings.

Proceedings of the National Academy of Sciences of the United States of America·2026

Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates.

Genome biology and evolution·2026

Does genetic variation in controlled experiments predict phenology of wild plants?

Journal of evolutionary biology·2025

Genotype by Environment Interactions in Gene Regulation Underlie the Response to Soil Drying in the Model Grass Brachypodium distachyon.

Molecular biology and evolution·2025

Machine learning-enabled non-targeted metabolomics reveals nutritional and metabolic responses of Brachypodium distachyon to drought and elevated CO2.

Journal of experimental botany·2025

Proprioception drives tension wood formation for autotropic straightening and postural control in trees.

The New phytologist·2026

Resolving root and mycorrhizal strategies in response to soil phosphorus addition in forest ecosystems: a global meta-analysis.

The New phytologist·2026

Still standing: persistence traits capture belowground plant functions beyond resource exploration and acquisition.

The New phytologist·2026

Nodulation does not alter root hydraulic conductance in pea.

The New phytologist·2026

The DlamiR156-DlaSPL60-DlaP5CS1 cascade directly regulates proline synthesis, conferring drought tolerance in Ma bamboo (Dendrocalamus latiflorus Munro).

The New phytologist·2026

High-variance phenome database reveals important roles of WD40 proteins in the plant pathogenic fungus Fusarium graminearum.

The New phytologist·2026

A VLCFA-auxin regulatory module modulates root morphogenesis in apple.

Horticulture research·2026

Insights into phylogenetic relationships of Veronica species (Plantaginaceae) based on comparative chloroplast genomics.

Frontiers in plant science·2026

Auxin biosynthetic key gene CpYUC10B in embryo involved in large-fruited Chinese cherry massive abscission during the pit hardening process.

Frontiers in plant science·2026

Functional Conservation of BIC-UVR8-Mediated Suppression of UV-B Responses in Arabidopsis and Eggplant.

Plant, cell & environment·2026

Genomic and evolutionary analysis reveals dynamic variations of MKK3 gene, a key regulator for seed dormancy in barley.

The plant genome·2026
See all related articles
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies
Jove
Visualize
Contact Us