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Contrastive pre-training and linear interaction attention-based transformer for universal medical reports generation
Zhihong Lin1, Donghao Zhang2, Danli Shi3
1Faculty of Engineering, Monash University, Clayton, VIC, 3800, Australia.
Journal of Biomedical Informatics
|January 13, 2023
Summary
This study introduces a novel attention module and contrastive pre-training for medical image report generation, improving fusion of visual and language data. The method achieves state-of-the-art performance on multiple datasets, enhancing diagnostic efficiency.
Area of Science:
- Artificial Intelligence
- Medical Imaging
- Natural Language Processing
Background:
- Automated medical report generation aids diagnosis and treatment by reducing workload and variability.
- Current image-encoder/language-decoder models face challenges in fusing visual and language cues and require domain-specific feature extractors.
Purpose of the Study:
- To develop an improved method for medical image report generation.
- To enhance the fusion of visual and language information in automated report generation.
- To address the domain gap for pre-trained image feature extractors in medical tasks.
Main Methods:
- Proposed a weighted query-key interacting attention module with first-order and second-order interactions for robust fusion.
- Introduced a contrastive pre-training step to minimize the domain gap between image encoders and target datasets.
- Validated the model on established datasets (IU X-RAY, MIMIC-CXR) and new retina datasets (Retina ImBank, Retina Chinese).
Main Results:
- The proposed weighted query-key attention module demonstrated superior fusion of language and visual signals compared to scaled dot-product attention.
- Contrastive pre-training effectively reduced the domain gap for image feature extraction.
- The model achieved state-of-the-art performance across all tested medical report generation datasets.
Conclusions:
- The developed method significantly enhances automated medical report generation by improving data fusion and addressing domain specificity.
- The new datasets (Retina ImBank, Retina Chinese) will serve as valuable benchmarks for future research in multi-modal medical report generation.

