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Cell migration is a process by which the cells move from one location to another, playing an essential role in embryological development, repair and regeneration, immune response, and metastasis. Cells migrate in response to chemical or mechanical signals generated by specific organs or tissues. The overall mechanism includes three steps - polarization, protrusion, and release. Polarization involves the formation of a distinct cell front and rear, which determines the direction of movement.
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Cells can detect chemical cues in their environment and reorganize the cytoskeleton to migrate toward them or away from them. This directional migration, called chemotaxis, is essential during embryogenesis and development, immune response, tissue repair and regeneration, and reproduction. These chemical cues can either attract or repel the cell's movement. For example, axon development is determined by a combination of chemoattractants and chemorepellents that direct the growing axon...
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Cell Migration in Three Dimensions.

Coert Margadant1

  • 1Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam University Medical Center, Amsterdam, The Netherlands. c.margadant@amsterdamumc.nl.

Methods in Molecular Biology (Clifton, N.J.)
|January 18, 2023
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Summary

This paper compiles a range of methods for studying how cells move in three-dimensional environments. The authors collected protocols from various model systems, including cells, organoids, and whole organisms like zebrafish and mice. The methods cover processes such as nuclear deformation, matrix degradation, and immune cell movement. The study also includes automated tools for analyzing migration patterns. The authors aim to provide a comprehensive resource for researchers in cell biology and related fields. The collection supports both basic and applied research on cell migration.

Keywords:
Caenorhabditis elegansCancer invasionCell migrationDevelopmentDrosophila melanogasterExtracellular matrixIntegrinsIntravital imagingOrganoidsZebrafishcell migrationthree-dimensional modelscell migration protocolsorganoid culturetumor vascularization

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Area of Science:

  • Cell biology
  • Developmental biology
  • Cancer research

Background:

Understanding how cells move is crucial for many biological processes. Prior research has shown that migration is involved in embryonic development, wound healing, and immune responses. However, the mechanisms behind these movements remain complex and not fully understood. No prior work had resolved the full range of techniques for studying migration in three-dimensional environments. This gap motivated the compilation of diverse methods across multiple model systems. Researchers have already developed various tools, but a comprehensive overview was missing. This paper fills that gap by collecting current protocols for cell migration studies. The methods span from basic cell models to whole organisms and advanced imaging techniques.

Purpose Of The Study:

This paper aims to provide a comprehensive overview of current methods for studying cell migration. The authors focus on three-dimensional models and diverse biological systems. They address the need for standardized and advanced protocols in the field. The motivation stems from the complexity of migration in different contexts. The study includes methods for nuclear deformation and matrix degradation. It also covers tumor vascularization and immune cell movement. The goal is to make these techniques accessible to a wide range of researchers. The paper serves as a reference for both basic and applied studies in cell migration.

Main Methods:

The authors collected and described a range of experimental techniques. These include organoid cultures and tissue explants for in vitro studies. They also include microfluidic systems for controlled environments. The methods cover developmental processes like neural tube closure. Scripts for automated analysis of migration are provided. The study uses model organisms such as Drosophila and zebrafish. Tumor vascularization and cancer invasion are examined using these models. The methods emphasize both imaging and biochemical approaches.

Main Results:

The study presents a collection of 15 detailed protocols for cell migration. These methods span from cell culture to whole-animal models. The authors highlight techniques for measuring nuclear deformation and energy use. They describe tools for tracking endocytic trafficking and matrix degradation. Automated scripts for analyzing migration patterns are included. The methods cover developmental processes like branching morphogenesis. The paper also includes approaches for studying immune cell movement. These protocols provide a comprehensive toolkit for researchers in the field.

Conclusions:

The authors conclude that the compiled methods offer a valuable resource for cell migration research. The protocols cover a wide range of biological contexts and model systems. The study emphasizes the importance of three-dimensional environments. The authors suggest that these methods will enhance understanding of migration mechanisms. They note that the automated analysis tools improve data consistency. The paper supports both basic and translational research in cell biology. The authors propose that these methods can be adapted for various experimental needs. The collection aims to standardize and advance the study of cell migration.

The study compiles 15 detailed protocols for studying cell migration in three dimensions.

The methods cover cells, organoids, tissue explants, Drosophila, zebrafish, and mice.

The authors provide scripts to analyze migration patterns and nuclear deformation.

The study includes methods for neural tube closure and branching morphogenesis.

The methods examine cancer cell invasion and tumor vascularization in 3D models.

The authors suggest the methods are of prime importance for researchers in cell migration.