Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Modeling autoimmune encephalitis with the human hippocampus.

Proceedings of the National Academy of Sciences of the United States of America·2026
Same author

MR-Guided PET Denoising and Resolution Enhancement Improves Visual Interpretation and Preserves Quantitative Behavior Across Amyloid Tracers.

medRxiv : the preprint server for health sciences·2026
Same author

Safety and Efficacy of Expedited Discharge Protocols After Endoscopic Endonasal Pituitary Surgery: A Single-Center Cohort Study.

Neurosurgery·2026
Same author

Diagnosis of Multiple Sclerosis Using Multimodal Deep Learning Integrating Lesion and Normal-Appearing White Matter: A Retrospective Study with International Multicentre External Validation.

medRxiv : the preprint server for health sciences·2026
Same author

Progressive axonal degeneration in white matter pathways traversing peritumoral penumbra in frontotemporal glioma.

Computational diffusion MRI. CDMRI (Workshop)·2026
Same author

Clinically Feasible White Matter Fiber Tractography in Peritumoral Zones With Cerebral Vasogenic Edema.

Magnetic resonance in medicine·2026
Same journal

Diffusion phantom study of fiber crossings at varied angles reconstructed with ODF-Fingerprinting.

Computational diffusion MRI : MICCAI Workshop·2025
Same journal

Self Supervised Denoising Diffusion Probabilistic Models for Abdominal DW-MRI.

Computational diffusion MRI : MICCAI Workshop·2024
Same journal

FASSt : Filtering via Symmetric Autoencoder for Spherical Superficial White Matter Tractography.

Computational diffusion MRI : MICCAI Workshop·2024
Same journal

Automated Mapping of Residual Distortion Severity in Diffusion MRI.

Computational diffusion MRI : MICCAI Workshop·2024
Same journal

Lesion Normalization and Supervised Learning in Post-traumatic Seizure Classification with Diffusion MRI.

Computational diffusion MRI : MICCAI Workshop·2023
Same journal

Inter-Scanner Harmonization of High Angular Resolution DW-MRI using Null Space Deep Learning.

Computational diffusion MRI : MICCAI Workshop·2021
See all related articles

Related Experiment Video

Updated: Jun 13, 2026

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
13:43

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

Published on: June 24, 2013

14.2K

Stepwise Stochastic Dictionary Adaptation Improves Microstructure Reconstruction with Orientation Distribution

Patryk Filipiak1, Timothy Shepherd1, Lee Basler2

  • 1Center for Advanced Imaging Innovation and Research (CAIR), Department of Radiology, NYU Langone Health, New York, NY, USA.

Computational Diffusion MRI : MICCAI Workshop
|January 25, 2023
PubMed
Summary
This summary is machine-generated.

This study introduces a novel stochastic method for generating Orientation Distribution Function (ODF) dictionaries, improving white matter modeling accuracy. The new approach yields less noisy diffusion MRI results and better free water separation.

Keywords:
Brain microstructureDiffusion MRIODF FingerprintingStochastic optimizationWhite matter

More Related Videos

Imaging Intermediate Filaments and Microtubules with 2-dimensional Direct Stochastic Optical Reconstruction Microscopy
14:23

Imaging Intermediate Filaments and Microtubules with 2-dimensional Direct Stochastic Optical Reconstruction Microscopy

Published on: March 6, 2018

10.9K
High-Throughput Total Internal Reflection Fluorescence and Direct Stochastic Optical Reconstruction Microscopy Using a Photonic Chip
14:09

High-Throughput Total Internal Reflection Fluorescence and Direct Stochastic Optical Reconstruction Microscopy Using a Photonic Chip

Published on: November 16, 2019

7.0K

Related Experiment Videos

Last Updated: Jun 13, 2026

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
13:43

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

Published on: June 24, 2013

14.2K
Imaging Intermediate Filaments and Microtubules with 2-dimensional Direct Stochastic Optical Reconstruction Microscopy
14:23

Imaging Intermediate Filaments and Microtubules with 2-dimensional Direct Stochastic Optical Reconstruction Microscopy

Published on: March 6, 2018

10.9K
High-Throughput Total Internal Reflection Fluorescence and Direct Stochastic Optical Reconstruction Microscopy Using a Photonic Chip
14:09

High-Throughput Total Internal Reflection Fluorescence and Direct Stochastic Optical Reconstruction Microscopy Using a Photonic Chip

Published on: November 16, 2019

7.0K

Area of Science:

  • Neuroimaging
  • Biophysics
  • Computational Neuroscience

Background:

  • Accurate modeling of white matter microstructure is crucial for understanding brain structure and function.
  • Multicompartment biophysical models are complex and computationally intensive, often posing ill-posed optimization problems.
  • Orientation Distribution Function (ODF) Fingerprinting offers a tractable approach but is limited by dictionary generation methods.

Purpose of the Study:

  • To develop an improved method for generating Orientation Distribution Function (ODF) dictionaries for white matter modeling.
  • To enhance the computational tractability and accuracy of multicompartment biophysical models in diffusion MRI.
  • To specifically tailor ODF dictionary generation to individual diffusion-weighted images.

Main Methods:

  • Proposed a stepwise stochastic adaptation mechanism for generating ODF dictionaries.
  • Compared the proposed method against traditional uniform distribution sampling for ODF dictionaries.
  • Validated the approach using a diffusion phantom and in vivo human brain imaging data.

Main Results:

  • The stepwise stochastic adaptation mechanism generated ODF dictionaries tailored to specific diffusion-weighted images.
  • Reconstructed diffusivities were significantly less noisy compared to methods using uniform ODF dictionaries.
  • Separation of the free water fraction was more pronounced with the proposed dictionary generation method.

Conclusions:

  • The proposed stepwise stochastic adaptation mechanism offers a more accurate and robust approach to ODF dictionary generation.
  • This method improves the quality of white matter microstructure modeling in diffusion MRI.
  • The enhanced separation of free water fraction has implications for more precise brain tissue characterization.