Related Experiment Video
Updated: Aug 12, 2025

Determination of the Gas-phase Acidities of Oligopeptides
Published on: June 24, 2013
Aqueous pKa prediction for tautomerizable compounds using equilibrium bond lengths
Beth A Caine1,2, Maddalena Bronzato3, Torquil Fraser3
1Department of Chemistry, University of Manchester, Manchester, UK.
Abstract:
The accurate prediction of aqueous pKa values for tautomerizable compounds is a formidable task, even for the most established in silico tools. Empirical approaches often fall short due to a lack of pre-existing knowledge of dominant tautomeric forms. In a rigorous first-principles approach, calculations for low-energy tautomers must be performed in protonated and deprotonated forms, often both in gas and solvent phases, thus representing a significant computational task. Here we report an alternative approach, predicting pKa values for herbicide/therapeutic derivatives of 1,3-cyclohexanedione and 1,3-cyclopentanedione to within just 0.24 units. A model, using a single ab initio bond length from one protonation state, is as accurate as other more complex regression approaches using more input features, and outperforms the program Marvin. Our approach can be used for other tautomerizable species, to predict trends across congeneric series and to correct experimental pKa values.
Related Concept Videos
Basicity of Aliphatic Amines
To measure the basicity of amines, two conventions are generally used. The first defines Kb as the basicity constant for the deprotonation reaction of water by the amine, as presented in Figure 1. Conventionally, lower Kb indicates...
Acid and Bases: Ka, pKa, and Relative Strengths
Position of Equilibrium in Acid-Base Reactions
Solvating Effects
Relative Strengths of Conjugate Acid-Base Pairs
Leveling Effect and Non-Aqueous Acid-Base Solutions
The Leveling Effect of a Solvent
A generic acid (HA) reacts with the generic base (B-) to yield the corresponding conjugate base (A-) and conjugate acid (HB):

