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Updated: Aug 12, 2025

A Versatile Murine Model of Subcortical White Matter Stroke for the Study of Axonal Degeneration and White Matter Neurobiology
Published on: March 17, 2016
Post-mortem Magnetic Resonance Imaging of Degenerating and Reorganizing White Matter in Post-stroke Rodent Brain
Vera H Wielenga1, Rick M Dijkhuizen1, Annette Van der Toorn2
1Biomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Abstract:
Magnetic resonance imaging (MRI) allows noninvasive and non-destructive imaging of brain tissue. More specifically, the status of white matter fibers can be measured with diffusion-weighted MRI, enabling assessment of structural degeneration or remodeling of white matter tracts in diseased brain. Here, we describe the preparation of post-stroke rodent brain samples for post-mortem high-resolution 3D diffusion-weighted MR imaging, accompanied with guidelines for acquiring and processing the images.
Insights
This study details preparing post-stroke rodent brains for high-resolution 3D diffusion-weighted magnetic resonance imaging (dMRI). This method allows detailed assessment of white matter tract changes in diseased brains.
Area of Science:
- Neuroimaging
- Biomedical Engineering
- Neuroscience
Background:
- Magnetic resonance imaging (MRI) provides noninvasive and non-destructive brain tissue imaging.
- Diffusion-weighted MRI specifically assesses white matter fiber integrity.
- Degeneration or remodeling of white matter tracts is crucial in diseased brains.
Purpose of the Study:
- To describe the preparation of post-stroke rodent brain samples for post-mortem imaging.
- To provide guidelines for acquiring and processing high-resolution 3D diffusion-weighted MR images.
Main Methods:
- Utilized post-mortem rodent brain samples from stroke models.
- Employed high-resolution 3D diffusion-weighted magnetic resonance imaging (dMRI).
- Developed specific protocols for sample preparation, image acquisition, and data processing.
Main Results:
- Successfully prepared post-stroke rodent brain samples for advanced dMRI.
- Established a reproducible workflow for high-resolution 3D dMRI acquisition and processing.
- Demonstrated the feasibility of detailed white matter tract analysis in post-mortem stroke models.
Conclusions:
- The described method enables detailed, non-destructive analysis of white matter integrity post-stroke.
- This approach facilitates the study of structural changes in white matter tracts in neurological disease models.
- High-resolution 3D dMRI of post-mortem brains offers valuable insights into neurodegenerative processes.
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