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Updated: Aug 10, 2025

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
The impact of immunopeptidomics: From basic research to clinical implementation
Ilja E Shapiro1, Michal Bassani-Sternberg2
1Ludwig Institute for Cancer Research, University of Lausanne, 1005 Lausanne, Switzerland; Department of Oncology, Centre hospitalier universitaire vaudois (CHUV), 1005 Lausanne, Switzerland; Agora Cancer Research Centre, 1011 Lausanne, Switzerland.
Immunopeptidomics analyzes cell surface peptides (immunopeptidome) to reveal cellular health and disease states. This review covers basic, pre-clinical, and clinical applications of immunopeptidomics, including cancer treatment development.
Area of Science:
- Immunology
- Proteomics
- Mass Spectrometry
Background:
- The immunopeptidome, peptides presented by MHC/HLA molecules, reflects cellular health and is altered by perturbations like infection or cancer.
- Immunopeptidomics provides a detailed snapshot of this peptide repertoire.
Purpose of the Study:
- To review recent immunopeptidomics studies across basic, pre-clinical, and clinical research domains.
- To highlight the role of immunopeptidomics in understanding disease and developing novel therapies.
Main Methods:
- Extraction and analysis of peptides presented by MHC/HLA molecules.
- High-performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS) for deep immunopeptidome profiling.
Main Results:
- Studies have elucidated antigen processing, HLA restriction, and disease mechanisms.
- Exploration of the antigenic landscape has enabled pre-clinical immune targeting strategies.
Conclusions:
- Immunopeptidomics is crucial for understanding cellular states and disease.
- This field is paving the way for innovative cancer treatments and clinical applications.
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