Resistance to BRAF Inhibitors: EZH2 and Its Downstream Targets as Potential Therapeutic Options in Melanoma
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Updated: Aug 10, 2025

Analysis of Lymph Node Volume by Ultra-High-Frequency Ultrasound Imaging in the Braf/Pten Genetically Engineered Mouse Model of Melanoma
Published on: September 8, 2021
Anne Uebel1, Stefanie Kewitz-Hempel1, Edith Willscher2
1Department of Dermatology and Venereology, University Hospital Halle (Saale), Martin-Luther-University Halle-Wittenberg, 06120 Halle (Saale), Germany.
Abstract:
Activating BRAF mutations occurs in 50-60% of malignant melanomas. Although initially treatable, the development of resistance to BRAF-targeted therapies (BRAFi) is a major challenge and limits their efficacy. We have previously shown that the BRAFV600E signaling pathway mediates the expression of EZH2, an epigenetic regulator related to melanoma progression and worse overall survival. Therefore, we wondered whether inhibition of EZH2 would be a way to overcome resistance to vemurafenib. We found that the addition of an EZH2 inhibitor to vemurafenib improved the response of melanoma cells resistant to BRAFi with regard to decreased viability, cell-cycle arrest and increased apoptosis. By next-generation sequencing, we revealed that the combined inhibition of BRAF and EZH2 dramatically suppresses pathways of mitosis and cell cycle. This effect was linked to the downregulation of Polo-kinase 1 (PLK1), a key regulator of cell cycle and proliferation. Subsequently, when we inhibited PLK1, we found decreased cell viability of melanoma cells resistant to BRAFi. When we inhibited both BRAF and PLK1, we achieved an improved response of BRAFi-resistant melanoma cells, which was comparable to the combined inhibition of BRAF and EZH2. These results thus reveal that targeting EZH2 or its downstream targets, such as PLK1, in combination with BRAF inhibitors are potential novel therapeutic options in melanomas with BRAF mutations.
Insights
Targeting BRAF mutations in melanoma with BRAF inhibitors (BRAFi) faces resistance. Combining BRAFi with EZH2 or PLK1 inhibitors overcomes this resistance by inhibiting cell cycle pathways.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Activating BRAF mutations are common in malignant melanomas, initially responsive to BRAF inhibitors (BRAFi).
- Resistance to BRAFi is a significant challenge, limiting treatment efficacy.
- The BRAFV600E pathway regulates EZH2, an epigenetic factor linked to melanoma progression.
Purpose of the Study:
- To investigate if EZH2 inhibition can overcome vemurafenib resistance in melanoma.
- To explore the downstream effects of combined BRAF and EZH2 inhibition on cell cycle regulation.
Main Methods:
- Utilized BRAF inhibitors (BRAFi) and EZH2 inhibitors in resistant melanoma cell lines.
- Employed next-generation sequencing to analyze pathway suppression.
- Investigated the role of Polo-kinase 1 (PLK1) in BRAFi resistance.
Main Results:
- Combined BRAFi and EZH2 inhibition decreased viability, induced cell-cycle arrest, and increased apoptosis in resistant melanoma cells.
- Combined inhibition suppressed mitosis and cell cycle pathways, linked to PLK1 downregulation.
- Inhibiting PLK1 alone or in combination with BRAFi also reduced viability in resistant cells.
Conclusions:
- Targeting EZH2 or its downstream target PLK1 alongside BRAF inhibitors shows promise for treating BRAF-mutated melanomas.
- Combined BRAF and EZH2 inhibition, or BRAF and PLK1 inhibition, represents a potential therapeutic strategy against BRAFi-resistant melanoma.
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