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Measuring Nucleotide Binding to Intact, Functional Membrane Proteins in Real Time
Published on: March 11, 2021
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NAD(P)H binding configurations revealed by time-resolved fluorescence and two-photon absorption.
Thomas S Blacker1, Michael R Duchen2, Angus J Bain3
1Department of Physics & Astronomy, University College London, London, United Kingdom; Research Department of Cell & Developmental Biology, University College London, London, United Kingdom.
Biophysical Journal
|February 16, 2023
Summary
Understanding the fluorescence of NADH and NADPH reveals how they bind to enzymes. This study clarifies their differing lifetimes and binding dynamics, crucial for cellular metabolism.
Area of Science:
- Biochemistry
- Biophysics
- Cellular Metabolism
Background:
- Nicotinamide adenine dinucleotide (NADH) and nicotinamide adenine dinucleotide phosphate (NADPH) are vital cofactors in metabolic regulation.
- Their intrinsic fluorescence properties are sensitive to enzyme interactions, enabling metabolic state monitoring via fluorescence lifetime imaging microscopy (FLIM).
- A deeper understanding of the photophysical and binding dynamics of NADH and NADPH is needed to fully elucidate their biochemical roles.
Purpose of the Study:
- To investigate the fluorescence and binding dynamics of NADH and NADPH with their respective enzymes.
- To correlate fluorescence lifetimes with specific binding mechanisms and conformational changes.
- To unify photophysical, structural, and functional insights into NADH and NADPH binding.
Main Methods:
- Time- and polarization-resolved fluorescence spectroscopy.
- Polarized two-photon absorption measurements.
- Analysis of fluorescence anisotropy decay components and lifetimes.
Main Results:
- Two distinct fluorescence lifetimes were observed upon binding of NADH to lactate dehydrogenase and NADPH to isocitrate dehydrogenase.
- Shorter lifetime components (1.3-1.6 ns) correlated with partial nicotinamide ring motion, suggesting adenine-moiety attachment.
- Longer lifetime components (3.2-4.4 ns) indicated fully restricted nicotinamide conformational freedom, consistent with full binding.
Conclusions:
- The study differentiates NADH and NADPH binding mechanisms based on fluorescence lifetime and dynamics.
- Results link photophysical properties to specific catalytic steps in dehydrogenase enzymes.
- This work clarifies the biochemical basis for contrasting intracellular lifetimes of NADH and NADPH.
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