Two genomes, one destiny: Mitophagy at the crossroads of inheritance and disease

Chih-Yao Chung1, Kritarth Singh2, Brigida R Pinho3

  • 1Hubrecht Institute-KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, the Netherlands.

Cell Chemical Biology
|December 19, 2025
PubMed

Insights

Mitochondrial DNA mutations can evade cellular defenses during development by disabling the ubiquitin-proteasome system. Restoring this system via USP30 inhibition offers a promising therapeutic strategy for mitochondrial DNA disorders.

Area of Science:

  • Cellular Biology
  • Genetics
  • Developmental Biology

Background:

  • Mito-nuclear compatibility is crucial for cellular function but poorly understood.
  • Mitochondrial DNA (mtDNA) mutations can disrupt cellular homeostasis.
  • Embryogenesis requires precise regulation of genetic material.

Purpose of the Study:

  • To investigate how mitochondrial DNA mutations are managed during embryogenesis.
  • To identify mechanisms by which mtDNA mutations evade cellular surveillance.
  • To explore potential therapeutic targets for mtDNA disorders.

Main Methods:

  • Utilized a mouse model with a specific mtDNA mutation.
  • Investigated the role of the ubiquitin-proteasome system in mtDNA surveillance.
  • Examined the effect of USP30 inhibition on mitophagy and mutant mtDNA levels.

Main Results:

  • A specific mtDNA mutation was found to repress the ubiquitin-proteasome system during embryogenesis.
  • Inhibition of USP30 restored ubiquitin-mediated mitophagy.
  • USP30 inhibition led to a reduction in the burden of mutant mtDNA.

Conclusions:

  • The ubiquitin-proteasome system is a key component of mitochondrial surveillance against mtDNA mutations.
  • USP30 plays a critical role in regulating mitophagy and clearing mutant mtDNA.
  • Targeting USP30 presents a potential therapeutic avenue for treating mitochondrial DNA disorders.

Related Concept Videos

Delivery Pathways to the Lysosome01:36

Delivery Pathways to the Lysosome

Eukaryotic cells use different mechanisms to eliminate toxic waste obsolete and worn-out substances. Lysosomes play a pivotal role in this, and hence, these substances are carried to the lysosome from other parts of the cell and extracellular space through different pathways. The most elaborately studied pathways to the lysosome are the endocytic pathways.
Endocytosis
In endocytosis, the cell membrane takes up macromolecules and particles from the surrounding medium. Clathrin-mediated...
8.7K
Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
11.8K
Autophagy01:27

Autophagy

Autophagy is a self-digesting process by which a cell protects itself from threats both within and outside the cell, ranging from abnormal proteins to invading bacteria. In this process, obsolete components of the cell and invading microbes are degraded by hydrolytic enzymes active in an acidic environment of the lysosomal lumen.
An autophagic pathway consists of a series of signaling events activated in response to diverse stress and physiological conditions such as food deprivation,...
5.6K
Animal Mitochondrial Genetics02:59

Animal Mitochondrial Genetics

Among all the organelles in an animal cell, only mitochondria have their own independent genomes. Animal mitochondrial DNA is a double-stranded, closed-circular molecule with around 20,000 base pairs. Mitochondrial DNA is unique in that one of its two strands, the heavy, or H, -strand is guanine rich, whereas the complementary strand is cytosine rich and called the light, or L, -strand. Compared to nuclear DNA, mitochondrial DNA has a very low percentage of non-coding regions and is marked by...
8.9K
Autophagic Cell Death01:18

Autophagic Cell Death

Christian de Duve discovered “autophagy,” a process in which cellular components are engulfed by membrane-bound organelles called autophagosomes. The autophagosomes then fuse with lysosomes to digest the enclosed contents. Autophagy is generally activated in cells to prevent cell death. However, cell death is triggered when the damage is beyond repair.
Autophagy and Apoptosis
Autophagy can activate apoptosis. In normal conditions, the autophagy activating protein Beclin-1 and...
4.3K
The Proteasome01:13

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
1.6K