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Clustering and prediction of disease progression trajectories in Huntington's disease: An analysis of Enroll-HD data
Jinnie Ko1, Hannah Furby2, Xiaoye Ma1
1Genentech Inc., South San Francisco, CA, United States.
Insights
Researchers identified three Huntington's disease (HD) progression rates using machine learning. The CAG-age product score, symptom onset, and apathy predict disease trajectory, aiding personalized care for HD patients.
Area of Science:
- Neuroscience
- Genetics
- Computational Biology
Background:
- Huntington's disease (HD) is a progressive neurodegenerative disorder with variable symptom severity and progression rates.
- Diagnosis of manifest HD typically relies on genetic confirmation and/or motor symptoms, despite earlier cognitive and behavioral signs.
- Understanding factors influencing HD progression is crucial for effective patient management.
Purpose of the Study:
- To model the longitudinal natural history of disease progression in individuals with manifest Huntington's disease.
- To identify key features predicting disease trajectory and group patients based on progression rates.
- To inform the development of prognostic models for individualized clinical care in HD.
Main Methods:
- Retrospective analysis of the global, observational Enroll-HD study data (NCT01574053).
- Unsupervised machine learning (k-means clustering) to group 4,961 individuals with manifest HD into rapid, moderate, and slow progressors.
- Supervised machine learning (XGBoost) to identify predictive features of disease trajectory.
Main Results:
- Individuals with manifest HD were successfully clustered into three distinct progression groups: rapid (25.3%), moderate (45.5%), and slow (29.2%).
- The top predictor for cluster assignment was the cytosine adenine guanine-age product score (CAG repeat length x age).
- Other significant predictors included years since symptom onset, history of apathy, body mass index, and age at enrollment.
Conclusions:
- The CAG-age product score is a key factor influencing Huntington's disease progression rate.
- Identifying distinct progression trajectories and predictive factors can enhance understanding of HD.
- Prognostic models based on these findings could significantly improve individualized clinical care planning and disease management for HD patients.
Introduction:
Huntington's disease (HD) is a rare neurodegenerative disease characterized by cognitive, behavioral and motor symptoms that progressively worsen with time. Cognitive and behavioral signs of HD are generally present in the years prior to a diagnosis; however, manifest HD is typically assessed by genetic confirmation and/or the presence of unequivocal motor symptoms. Nevertheless, there is a large variation in symptom severity and rate of progression among individuals with HD.
Methods:
In this retrospective study, longitudinal natural history of disease progression was modeled in individuals with manifest HD from the global, observational Enroll-HD study (NCT01574053). Unsupervised machine learning (k-means; km3d) was used to jointly model clinical and functional disease measures simultaneously over time, based on one-dimensional clustering concordance such that individuals with manifest HD (N = 4,961) were grouped into three clusters: rapid (Cluster A; 25.3%), moderate (Cluster B; 45.5%) and slow (Cluster C; 29.2%) progressors. Features that were considered predictive of disease trajectory were then identified using a supervised machine learning method (XGBoost).
Results:
The cytosine adenine guanine-age product score (a product of age and polyglutamine repeat length) at enrollment was the top predicting feature for cluster assignment, followed by years since symptom onset, medical history of apathy, body mass index at enrollment and age at enrollment.
Conclusions:
These results are useful for understanding factors that affect the global rate of decline in HD. Further work is needed to develop prognostic models of HD progression as these could help clinicians with individualized clinical care planning and disease management.
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