Clustering and prediction of disease progression trajectories in Huntington's disease: An analysis of Enroll-HD data

Jinnie Ko1, Hannah Furby2, Xiaoye Ma1

  • 1Genentech Inc., South San Francisco, CA, United States.

Frontiers in Neurology
|February 16, 2023
PubMed

Insights

Researchers identified three Huntington's disease (HD) progression rates using machine learning. The CAG-age product score, symptom onset, and apathy predict disease trajectory, aiding personalized care for HD patients.

Area of Science:

  • Neuroscience
  • Genetics
  • Computational Biology

Background:

  • Huntington's disease (HD) is a progressive neurodegenerative disorder with variable symptom severity and progression rates.
  • Diagnosis of manifest HD typically relies on genetic confirmation and/or motor symptoms, despite earlier cognitive and behavioral signs.
  • Understanding factors influencing HD progression is crucial for effective patient management.

Purpose of the Study:

  • To model the longitudinal natural history of disease progression in individuals with manifest Huntington's disease.
  • To identify key features predicting disease trajectory and group patients based on progression rates.
  • To inform the development of prognostic models for individualized clinical care in HD.

Main Methods:

  • Retrospective analysis of the global, observational Enroll-HD study data (NCT01574053).
  • Unsupervised machine learning (k-means clustering) to group 4,961 individuals with manifest HD into rapid, moderate, and slow progressors.
  • Supervised machine learning (XGBoost) to identify predictive features of disease trajectory.

Main Results:

  • Individuals with manifest HD were successfully clustered into three distinct progression groups: rapid (25.3%), moderate (45.5%), and slow (29.2%).
  • The top predictor for cluster assignment was the cytosine adenine guanine-age product score (CAG repeat length x age).
  • Other significant predictors included years since symptom onset, history of apathy, body mass index, and age at enrollment.

Conclusions:

  • The CAG-age product score is a key factor influencing Huntington's disease progression rate.
  • Identifying distinct progression trajectories and predictive factors can enhance understanding of HD.
  • Prognostic models based on these findings could significantly improve individualized clinical care planning and disease management for HD patients.
Abstract

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