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Updated: Aug 9, 2025

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Potential influence of antimicrobial resistance gene content in probiotic bacteria on the gut resistome ecosystems
Marina Radovanovic1, Dusan Kekic2, Ina Gajic2
1Department of Biochemistry, Institute for Biological Research "Siniša Stanković", National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia.
Abstract:
Antimicrobial resistance (AMR) poses a substantial threat to human health. The commensal bacteria of the gut microbiome were shown to serve as a reservoir of antibiotic resistance genes (ARGs), termed the gut resistome, which has the potential to transfer horizontally to pathogens and contribute to the emergence of drug-resistant bacteria. Namely, AMR traits are generally linked with mobile genetic elements (MGEs), which apart from disseminating vertically to the progeny, may cross horizontally to the distantly related microbial species. On the other hand, while probiotics are generally considered beneficiary to human health, and are therefore widely consumed in recent years most commonly in conjunction with antibiotics, the complexities and extent of their impact on the gut microbiome and resistome have not been elucidated. By reviewing the latest studies on ARG containing commercial probiotic products and common probiotic supplement species with their actual effects on the human gut resistome, this study aims to demonstrate that their contribution to the spread of ARGs along the GI tract merits additional attention, but also indicates the changes in sampling and profiling of the gut microbiome which may allow for the more comprehensive studying of the effects of probiotics in this part of the resistome.
Insights
Probiotics may contribute to the spread of antibiotic resistance genes (ARGs) in the gut microbiome. Further research is needed to understand their impact on the gut resistome and inform safe usage alongside antibiotics.
Area of Science:
- Microbiology
- Genetics
- Public Health
Background:
- Antimicrobial resistance (AMR) is a major global health threat.
- The gut microbiome acts as a reservoir for antibiotic resistance genes (ARGs), contributing to AMR emergence.
- Mobile genetic elements (MGEs) facilitate the spread of AMR traits within and between bacterial species.
Purpose of the Study:
- To review the impact of commercial probiotic products and common probiotic species on the gut microbiome and resistome.
- To assess the contribution of probiotics to the dissemination of ARGs in the gastrointestinal tract.
- To highlight the need for improved methods in studying probiotic effects on the gut resistome.
Main Methods:
- Literature review of studies on ARGs in probiotic products.
- Analysis of research on the effects of probiotic species on the human gut resistome.
- Examination of current sampling and profiling techniques for gut microbiome research.
Main Results:
- Commercial probiotic products and common probiotic species contain ARGs.
- Probiotics may play a role in the spread of ARGs within the gut.
- Existing methods for studying the gut microbiome may not fully capture probiotic impacts on the resistome.
Conclusions:
- The contribution of probiotics to ARG dissemination warrants further investigation.
- Probiotics' impact on the gut resistome requires more comprehensive study.
- Refined microbiome sampling and profiling are essential for understanding probiotic-ARG interactions.
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