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Adaptive unscented Kalman filter for neuronal state and parameter estimation.

Loïc J Azzalini1,2, David Crompton2,3, Gabriele M T D'Eleuterio1

  • 1Institute for Aerospace Studies, University of Toronto, Toronto, Ontario, Canada.

Journal of Computational Neuroscience
|March 1, 2023
PubMed
Summary

A new robust adaptive unscented Kalman filter (RAUKF) accurately tracks neuron models by estimating states and parameters. This adaptive filter shows improved accuracy and fault tolerance compared to standard Kalman filters in computational neuroscience.

Keywords:
AdaptabilityConductance-based modelModel mismatchNonlinear Kalman filtering

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Area of Science:

  • Computational Neuroscience
  • Biophysics
  • Signal Processing

Background:

  • Data assimilation is crucial for state and parameter estimation in computational neuroscience.
  • Traditional Kalman filter variants struggle with online adaptation and robustness in complex biological models.

Purpose of the Study:

  • To evaluate the performance of a robust adaptive unscented Kalman filter (RAUKF) for tracking conductance-based neuron models.
  • To compare RAUKF against existing nonlinear Kalman filters in terms of accuracy and robustness.

Main Methods:

  • Implemented a robust adaptive unscented Kalman filter (RAUKF) for joint state and parameter estimation.
  • Utilized online adjustment of noise covariance matrices based on innovation and residual information.
  • Benchmarked RAUKF against standard nonlinear Kalman filters using simulated neuron models under various challenging conditions (model mismatch, measurement faults).

Main Results:

  • The RAUKF demonstrated superior accuracy in tracking the states and parameters of the conductance-based neuron model.
  • RAUKF exhibited enhanced robustness to simulated practical challenges, including model mismatch and measurement faults.
  • Performance analysis revealed the adaptive filter's effectiveness in dynamic and noisy neuroscientific modeling scenarios.

Conclusions:

  • The RAUKF offers a more accurate and robust data assimilation approach for computational neuroscience.
  • Online adaptation of noise covariances significantly improves filter performance in complex biological systems.
  • RAUKF provides a valuable tool for reliable state and parameter estimation in neuronal modeling.