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Regularized Bennett and Zwanzig free energy estimators
S Decherchi1, G Ciccotti2, A Cavalli1
1Computational and Chemical Biology, Fondazione Istituto Italiano di Tecnologia, Genoa, Italy.
Abstract:
We consider the problem of free energy estimation from the general perspective of regularization and Bayes estimation theory. We try to take advantage of an assumed a priori knowledge of the free energy. We reformulate the original Bennett acceptance ratio method, in this perspective, devise a numerical algorithm to solve it, and give a closed formula to estimate the confidence in the prior. Finally, we test the derived estimators by applying them to a toy model.
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